RNA id: TU157060



Basic Information


Item Value
RNA id TU157060
length 732
RNA type TUCP
GC content 0.46
exon number 3
gene id G136399
representative True

Chromosome Information


Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 35306367 ~ 35307729 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


ggAAAACTTATTTTTAGAGTACTGTTTTATCAGTTAGTACATTACAGGTACAAACTCTATGCCATTATACTAGCTACAGTCAAGTAAAACATACTTAAGAACCTGCAGAGCACATAAAAAGACCCTCCATTCACTATGTGTGTGTTCAAGTTTGGAATCACAGCCCCTGAGTTGTCAATGGCCCTTTAGTAAATTAAGCAAAATTCAGTCCAAGGTCAATGTTAGTCTGTGAAACCACAAACGGACAAGgtagtacaaacacacacaactcacaaAATGTGTGTCtaaatgccttttttttttttaatggagaaGTGGGGGTGGGGTTACTTTCTACTTGTAGAACTCATGCTCCTGCTCATCCTTCTTGATAACAGTCTTGTAGGCCTTCTCAAAGTCCTTGGCCAGGACGATGTACCTATTTTCACGGACAGCCAGCATGCCAGCCTCCTGGCAGATAGAGTTGATGTCTGCTCCGGAGATCTTGTCTGGTCTGGCCACATAGTCCTCCAGGTCCACCTCCTCAGAGAGGTTCATCTTGCTGGTGATGGTGGAGAAGACCAGGCGTTTCTGCCGGCGGTCAGGTAGGGGAAACTCAATCTTTCTGTCCAGACGGCCCGGGCGCAGGAGGGCGGGGTCCAGGGTGTCTGCCCTGTTAGTGGCCATGATCACCTGACAAGAGATCAAACAGGTGGATCAGACAGAGGCAGGAAGTCATGATAAAGGCTTAAC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU157031 lncRNA downstream 21593 35245049 ~ 35284774 (-) True G136371
TU156988 lncRNA downstream 114696 35191088 ~ 35191671 (-) True G136340
TU156978 lncRNA downstream 130178 35175646 ~ 35176189 (-) True G136332
TU156959 lncRNA downstream 164638 35141550 ~ 35141729 (-) True G136319
TU156958 lncRNA downstream 164929 35140408 ~ 35141438 (-) True G136318
TU157107 lncRNA upstream 115137 35422866 ~ 35538723 (-) True G136433
TU157105 lncRNA upstream 118509 35426238 ~ 35426969 (-) True G136432
TU157112 lncRNA upstream 121270 35428999 ~ 35477440 (-) False G136435
TU157113 lncRNA upstream 121270 35428999 ~ 35477440 (-) False G136435
TU157109 lncRNA upstream 143305 35451034 ~ 35477440 (-) False G136435
XM_021560672.2 mRNA downstream 40719 35240548 ~ 35265648 (-) True LOC110488446
XM_021560663.2 mRNA downstream 101239 35199344 ~ 35205128 (-) True si:ch211-225p5.8
XM_021560655.2 mRNA downstream 103558 35199344 ~ 35202809 (-) False si:ch211-225p5.8
XM_021560598.2 mRNA downstream 132174 35158483 ~ 35174193 (-) False LOC110488360
XM_036946914.1 mRNA downstream 132174 35158483 ~ 35174193 (-) True LOC110488360
XR_005036528.1 mRNA upstream 13 35307742 ~ 35308824 (-) False LOC118939540
XR_005036529.1 mRNA upstream 13 35307742 ~ 35324682 (-) True LOC118939540
XM_021560741.2 mRNA upstream 40114 35347843 ~ 35357991 (-) True LOC110488508
XM_021560726.2 mRNA upstream 59103 35366832 ~ 35380061 (-) True LOC110488492
XM_036947128.1 mRNA upstream 299812 35607541 ~ 35609429 (-) True LOC118939553
TU156114 other downstream 701889 34604215 ~ 34604478 (-) True G135575
TU155089 other downstream 1440430 33865488 ~ 33865937 (-) True G134668
TU154709 other downstream 2081265 33212664 ~ 33225102 (-) True LOC110487618
TU154412 other downstream 2518246 32748208 ~ 32788121 (-) True G134102
TU154326 other downstream 2554789 32738829 ~ 32751578 (-) False LOC110514821
TU157405 other upstream 366569 35674298 ~ 35675627 (-) False drd2l
TU157404 other upstream 366702 35674431 ~ 35675705 (-) False drd2l
TU158240 other upstream 1062275 36370004 ~ 36370328 (-) True G137479
TU158620 other upstream 1326464 36634193 ~ 36639005 (-) True G137839
TU158866 other upstream 1518137 36825866 ~ 36828397 (-) False G138080

Expression Profile