RNA id: TU156827


Basic Information

Item Value
RNA id TU156827
length 440
lncRNA type inter_gene
GC content 0.38
exon number 1
gene id G136202
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 35394744 ~ 35395183 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTTATAAGGAATTCCTATCACTtgacaaggtccctgtaacacctaaagatgttgcaattgttttagatgccattccctcaggtgttgctctgttattcaggaacgtgtcaagacctgaccctcagagcctaccttctattgaccctgttgacacatcagtaggaaagatttgtttctcttttggtccattcaacaacagagcgatacgaaccttgtttcagcaggatgttgtaccttatgtcatgccttattggaatggatttattgataatatctgttggaaaaagtttggatgttgccacacacatacctacttgttaacaaaatgaaggaagtttcctttaaaattattcctaaatattatcctgccaaccactatatgaacaagtttaaggaaaacatcaactcaaattgctccttttgtaatgaccacccagaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU156826 lncRNA upstream 956 35393308 ~ 35393788 (+) True G136201
TU156824 lncRNA upstream 3460 35391068 ~ 35391284 (+) True G136199
TU156757 lncRNA upstream 105100 35289377 ~ 35289644 (+) True G136144
TU156706 lncRNA upstream 155694 35233194 ~ 35239050 (+) False LOC110534843
TU156779 lncRNA downstream 8525 35403708 ~ 35405944 (+) True LOC110488522
TU156842 lncRNA downstream 46547 35441730 ~ 35466376 (+) False LOC118939544
TU156850 lncRNA downstream 72714 35467897 ~ 35468365 (+) True LOC118939544
TU156857 lncRNA downstream 153365 35548548 ~ 35551647 (+) True LOC110488573
TU157245 lncRNA downstream 178941 35574124 ~ 35574329 (+) True G136554
XM_021560697.2 mRNA upstream 60301 35325276 ~ 35334443 (+) True LOC110488474
XM_021560689.2 mRNA upstream 87292 35294099 ~ 35307452 (+) True LOC110488465
XM_036946942.1 mRNA upstream 155499 35205184 ~ 35239245 (+) False LOC110534843
XM_036947031.1 mRNA downstream 1152 35396335 ~ 35405972 (+) False LOC110488522
XM_036947025.1 mRNA downstream 1418 35396601 ~ 35405972 (+) False LOC110488522
XM_021560752.2 mRNA downstream 1486 35396669 ~ 35405972 (+) False LOC110488522
XM_021560760.2 mRNA downstream 1486 35396669 ~ 35405972 (+) False LOC110488522
XM_036947021.1 mRNA downstream 2395 35397578 ~ 35405972 (+) False LOC110488522
TU156686 other upstream 210748 35180679 ~ 35183996 (+) False LOC110488391
TU156687 other upstream 210748 35180679 ~ 35183996 (+) True LOC110488391
TU156680 other upstream 241094 35151760 ~ 35153650 (+) True lypc
TU156467 other upstream 394189 34998396 ~ 35000555 (+) True LOC110488281
TU156464 other upstream 397948 34984972 ~ 34996796 (+) False LOC110488281
TU157479 other downstream 390508 35785691 ~ 35787470 (+) True LOC110488639
TU157485 other downstream 459966 35855149 ~ 35856400 (+) False LOC100653444
TU157486 other downstream 460045 35855228 ~ 35856400 (+) False LOC100653444
TU157722 other downstream 587649 35982832 ~ 36037741 (+) True G136994
TU157787 other downstream 704428 36099611 ~ 36100277 (+) True G137058

Expression Profile