RNA id: TU157110


Basic Information

Item Value
RNA id TU157110
length 3090
lncRNA type read_through
GC content 0.43
exon number 2
gene id G136435
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 35428999 ~ 35477440 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTGTTTTGGGTATGAGAAAACATATCAACTATATAGATAACAAACTGAACTGGTCACATTCTCTGTTGTTTACTTGATTTATTTGTTGTTTGGACCCAAAGAAAGATGGCTTTGCTTGAGGCGGGACAGACTTGTAAAAGAAAGAGAATGATCAAACATCATCATAGAGCTCTTATTGTCATTAAGTAATAACAGTGCTAATTTGCAGAAGGATTGCAGAATTCTGATCGGAATTATTGTGTcaaagatataaaaaaaaaatcatcacaataataataatgaataccACAAAGTAAAGAAAGTACAAATCTGCTTTACAACACACTATGTGACAAACAAATTAGAGAAGACATGAACAACGCTTCTCCATTTTGTTCCCAGGTTTAGAAAGAAATAAACCCCCCCATGAGGCGTTCAAGAGAACTGACGACAGTAAGTGTTACTAAACGGATGTCCATATTGGCATGTCTCAATGTTGGGCAACACATCTTGAACGCTCCGCCATTAGGTCTAGTGACTTAACCATGTCAGAACAATGACATAAAATATGTTATTAAACAGTCATGACAGCTGACATAAGCTTGACACCGTCATGGCACAAATCTTTGCTTCAGTCAGGTTATTGGCTTAGCATACCGCTAGCCAACTAATTTACATAAATACCCATTTGTGTCATGACAGTGTAAAGGGTTGTCAGTATTTTGACATCAGTTTACATGACCGAAAATGAcatgtgttatgttatgacagCGTTATGTCACCCTTATGACAGAGAAGTCAGTTAAAGTGTTACCGAACCTGTATCCGACTTGCCTGTGTAAACCATTGTTGCAATAGTGAGCATGTACATACCGTAGTGTATCTACACATATGGCTGACAGCATAATAGTCATGCAGGGTATTTATTTACATAATGTATACAGGTATCCTTTTACCCATCCATATGCAGCTTATTAATATTGTATTAACAGTCATTGTTATCTAGTGTTGCCATTAGTGAGCTTGGAGATTACATTACATGAGTTGATCAAGTATGTTTGAATAGCACAACCAACTGGTATAACAACTTCAATGTTGTGCCACTCAAATGCCTCCTCTGATACAACCCTATAGGATTAGGCATCGATTTCACACTTCACAACCATTGACGTAGACATTTTGTGAGAAGCGGTCTCAGGTAAAGTGATCTTTTGAAACACCCACAGTGATCAGTGTTCGCTGATCTTTCAGCActgtttacatacacacacacacacattgtctcaACGAGATACATTTTGTCCTGCTGTGCGAGTGTTACAGTGGAGTCATGTATGCCAGATTGATCCAAAAATGTATTCTAATCCATTGGTTCCCATTTAAGGATAAGTTAACACTTACCCTTAGCAAAACATCGTCCAAAAATACTAGTAATTAAATCATGGGCAACGGAATAAATAGAACATTCTGTGTTACCCCGGCATATTTCCACAAGAGCAAAACACAATGCAATCAGTGCTTATAATgcataaaaacaaaaatattcaGGCCACTTCTTGCACGAGCAGAACCTTGTGTTCGAGGCTCCACAAACCTGTAAGAGTATCAATTTTCTCTCTTTATATAAAATCAAAGAAATATTCATTTCTCATCATCATCAAAAGCCACAGAGTCACAGCACACATCACTATTGAACTATATGTTGGAACAGAATATGTGAGATGAAGATGACAggcttcaattggatgtgtaTCAGGCCTAACGTTTGTTGAACACTGGTCAGCGTTGACAACCACTGGatcaggaagagagaagagatccCTCATTTCCTCCAGATCCAgggtcagaaatagagataagaaAAGAAAAAGCACAAAACACACCCCTTTCCCTGACACTTCGACTGGCAGCGGACACAGTGGAGAAGAACTATAACGGATGGATCTAGACAGTTAGCCTGGTATCCAAACTGATTGCGCTGCGTTTCACAGGAAAACTGGTGAGCTCAGCGTTCaatctggtttaaccaggctagctATGAGTATGATATAGGGTGACATACAGAAGGGGAGCCCCAGAAAAGCAATGCCAACAATTAATGGTGTAGAGATGGAAATAGCAACATTGAATCTagatgatacagtacagtaactaacGCATTGCACCTGTTGTGAGGGAATTGTTTGACTATGAACAATAGAGTAAGAGCCTGGAGACCGACAGCTGCTGATAATACAAAGATCTTTTTACATTGTCCACTGGGCCGTGTTCTGACCCTGCAAGTAGCTACCAGCAGTCCTGGGTGGCGAGATGTGACTGGGGTTCCCCTTGGAGGCTTGGGGGTCGACTAACGGGGACGTCATTTGAGATGATTCAGGGACGGGCGGAGACGGTGGGAGTTCTTGGTGTGACGGTGAAGGTTGGGGGTGGAGTCTACGGGGGAGGGGGGAAGACGTTTGAAGAGGGGGCGAATGACGTGAGGAGGGGGGCGACAACATGGCTGCCACTGTGTCCCGCGGTGACGATGGGTCAGGGAAGGATCGCGATTCATTTGGCCTTGATCTCGGTGTAGTCGCTGCCGTCATCCCCCCTCCCTGAGGCCCCCCCATCCCTGGAGCGCCCCCCGAGAAACTGCAGGGCGGCGTAATTCAGCTCTTGCCTCTCCAGGTCTGCCATAGAGCCCACAGGTTGATAATCCCCGTCTTCTCCCTGTTGAAGATACGGAAAGAGAGAAGGCCCATTCAGAATCACAGGTTATATCAGCACAGTGCCACCAATGCCATTGACACCTCAGAACATTCAGAGTATAAAGGGATAACATGACAGACattgagagaggagaaaggagggttAGTAGTTACTGGTGAGCAGAGGCGTAAAACAAGGAGATTGAGGCGGTTTAGCATATCCTGTTAGTATCGAGGCAGCCGTGCAACAGTAGTACTGGAAATCAAAGGCAATAGAGCACATGGAAGCTGATCTCAGACAGCAGACGACTGTGGGCCAGATCTGGTTGTTTTGTGACACATACAATGTGGCTCAGTTCTGGCACCACAATGAGTCATATGGCCCAGATCTGGTCCAAATGTATGAGATGCGAACTGGGGGAGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU157105 lncRNA downstream 24065 35426238 ~ 35426969 (-) True G136432
TU157031 lncRNA downstream 166260 35245049 ~ 35284774 (-) True G136371
TU156988 lncRNA downstream 259363 35191088 ~ 35191671 (-) True G136340
TU156978 lncRNA downstream 274845 35175646 ~ 35176189 (-) True G136332
TU156959 lncRNA downstream 309305 35141550 ~ 35141729 (-) True G136319
TU157118 lncRNA upstream 16377 35493817 ~ 35498313 (-) True G136437
TU157228 lncRNA upstream 75608 35553048 ~ 35572904 (-) True G136539
TU157244 lncRNA upstream 96216 35573656 ~ 35573936 (-) True G136553
TU157253 lncRNA upstream 101464 35578904 ~ 35579164 (-) True G136562
TU157273 lncRNA upstream 113611 35591051 ~ 35591288 (-) True G136581
XM_021560726.2 mRNA downstream 70973 35366832 ~ 35380061 (-) True LOC110488492
XM_021560741.2 mRNA downstream 93043 35347843 ~ 35357991 (-) True LOC110488508
XR_005036529.1 mRNA downstream 126352 35307742 ~ 35324682 (-) True LOC118939540
XR_005036528.1 mRNA downstream 142210 35307742 ~ 35308824 (-) False LOC118939540
XM_021560672.2 mRNA downstream 185386 35240548 ~ 35265648 (-) True LOC110488446
XM_036947128.1 mRNA upstream 130101 35607541 ~ 35609429 (-) True LOC118939553
XM_021619801.2 mRNA upstream 132189 35609629 ~ 35610797 (-) True LOC110534863
XM_021560863.2 mRNA upstream 152109 35629549 ~ 35662664 (-) False LOC110488593
XM_021560872.2 mRNA upstream 152109 35629549 ~ 35663662 (-) True LOC110488593
XM_036947146.1 mRNA upstream 186808 35664248 ~ 35668411 (-) True LOC110488606
TU157060 other downstream 143305 35306367 ~ 35307729 (-) True G136399
TU156114 other downstream 846556 34604215 ~ 34604478 (-) True G135575
TU155089 other downstream 1585097 33865488 ~ 33865937 (-) True G134668
TU154709 other downstream 2225932 33212664 ~ 33225102 (-) True LOC110487618
TU154412 other downstream 2662913 32748208 ~ 32788121 (-) True G134102
TU157405 other upstream 196858 35674298 ~ 35675627 (-) False drd2l
TU157404 other upstream 196991 35674431 ~ 35675705 (-) False drd2l
TU158240 other upstream 892564 36370004 ~ 36370328 (-) True G137479
TU158620 other upstream 1156753 36634193 ~ 36639005 (-) True G137839
TU158866 other upstream 1348426 36825866 ~ 36828397 (-) False G138080

Expression Profile