RNA id: TU157577



Basic Information


Item Value
RNA id TU157577
length 257
lncRNA type antisense_over
GC content 0.45
exon number 2
gene id G136851
representative True

Chromosome Information


Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 35771628 ~ 35774702 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


GTAAGTAGTTGTTGAGTTGTCCACCCCATGCTTGTTCTCTGCTTCGCAATAGTACCGCCCACCATCATTGATAGCAATCTTATTGAAGGTGAAGCTCTGTCCAGATCCTACaatgactccctccctcccattgactctgtaccaggtgTAGGTCTTCACTGCTGGGTTGGCATTgctgctgcaggtcagagtcacaGAGCTGCCCTCTACCACTGGACCAGAGGGACTGACCGACAATGAGGTGTTCTTGGCAGGAT

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU157461 lncRNA downstream 15445 35755811 ~ 35756183 (-) True G136751
TU157459 lncRNA downstream 17140 35754274 ~ 35754488 (-) True G136749
TU157454 lncRNA downstream 19552 35751760 ~ 35752076 (-) True G136744
TU157453 lncRNA downstream 19989 35751361 ~ 35751639 (-) True G136743
TU157406 lncRNA downstream 70841 35688295 ~ 35700787 (-) True drd2l
TU157571 lncRNA upstream 17201 35791903 ~ 35864754 (-) False G136849
TU157574 lncRNA upstream 79570 35854272 ~ 35856704 (-) True G136849
TU157897 lncRNA upstream 318088 36092790 ~ 36094261 (-) False si:dkeyp-97a10.3
TU157900 lncRNA upstream 325875 36100577 ~ 36100780 (-) True G137165
TU157901 lncRNA upstream 327411 36102113 ~ 36102501 (-) True G137166
XM_036933832.1 mRNA downstream 32756 35736331 ~ 35738872 (-) True LOC118936742
XM_021560895.2 mRNA downstream 45314 35702882 ~ 35726314 (-) True LOC110488613
XM_036947154.1 mRNA downstream 70782 35674291 ~ 35700846 (-) False drd2l
XM_036947146.1 mRNA downstream 103217 35664248 ~ 35668411 (-) True LOC110488606
XM_021560872.2 mRNA downstream 107966 35629549 ~ 35663662 (-) True LOC110488593
XM_036947201.1 mRNA upstream 16560 35791262 ~ 35799257 (-) False LOC110488647
XM_036947200.1 mRNA upstream 16560 35791262 ~ 35799534 (-) True LOC110488647
XM_036947203.1 mRNA upstream 37046 35811748 ~ 35817824 (-) False vsig10l
XM_036947207.1 mRNA upstream 37046 35811748 ~ 35817949 (-) True vsig10l
XM_021560989.2 mRNA upstream 44374 35819076 ~ 35823095 (-) False etfb
TU157404 other downstream 95923 35674431 ~ 35675705 (-) False drd2l
TU157405 other downstream 96001 35674298 ~ 35675627 (-) False drd2l
TU157060 other downstream 463899 35306367 ~ 35307729 (-) True G136399
TU156114 other downstream 1167150 34604215 ~ 34604478 (-) True G135575
TU155089 other downstream 1905691 33865488 ~ 33865937 (-) True G134668
TU158240 other upstream 595302 36370004 ~ 36370328 (-) True G137479
TU158620 other upstream 859491 36634193 ~ 36639005 (-) True G137839
TU158866 other upstream 1051164 36825866 ~ 36828397 (-) False G138080
TU158919 other upstream 1070231 36844933 ~ 36849345 (-) True pnrc2
TU159561 other upstream 1686172 37460874 ~ 37463758 (-) True LOC110501508

Expression Profile