RNA id: TU157938


Basic Information

Item Value
RNA id TU157938
length 2873
lncRNA type antisense_over
GC content 0.45
exon number 1
gene id G137203
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 36143920 ~ 36146850 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CAAAAGAAAGACAtttaaaactaaaataaaaaagACCTGTTGGTACAACAGAGAGTTTGAAACATACagagtagagacacacagagacagagaccgaaaCAGAGCCAGAGGCATGGAACTCATGTGGCTACCTTGTTCGTATCATCAAACACCCATTGATTTTAGCAGGTGCCTCAGGACTCAAAATGGTATCACAGCACACAATCCTGACTGACATTCAATTAAAAAGTAATGACACAAACCGACCGCACGTCAAATACAAAATAACCTCAAGATACAGATGTAACAAATAGGAAAACCTTTAAAAAGTCCATCATCCTTGGCCACTGACAAAATCGGTCTTCAAACCAGTTTTAACACTGGGAAAACAGCATCCGATATTCTCTCGAGCAAACGGGATTTCAAAACCTCAACATGGACTGCGAATGGACTAAAAGCAAGCAGCGTCTGCTTGCACATCAAAACAGAGAGCTAAATGGAGTCAacatgtcttaaagtatttgTCTGTGGGTAATAGGTAGGAAAAGCCTATTGAAGTTCTGAACAGGGTTGACGACCCCTTCAAAGCTCCATGCCTCTGACCCTAGAGTGAGGTGGGAACGACTAACAGACAGTGGGCAAACAGAACAGCAACTCATTATTACAACACCTTGATTCGTTACACAGGTACAAGTCTAAGTACAGCACATAGAACCCTCAGGCTCCTGTTCTTACATCCATACACGTGGGGAAACATACACTTTTGTATGTTGGGGCTCACCAACTACTGTAGCACTGTTAGTGGTTTGAAAATAAACACGAGGATGACATTTTGGAGTTGGGCCTTTTTTTGTACTCAACTCAGGCATTCTGTAGTTGTAAATAAAACCCAACAACGAAGTAAGAACACACTTAAGACTGAGGATTGCATTTTTAAGTGGAATGGGACTTTAGTCTCTACTCCTTACTGTGTAAGTCTCTGGCACAAGAAAAAAAAACTCCAGAGGAGACATGAAAGCACAGAAGCCACACCTAACCATACATCCTCTGCCTTagcaccatccctccctccctccttttcccctctatTCTCACCCACCTGTACTCCACCAGGCCAGGGGAGTTTACATGGCTAACACATTAGCATCTCTGGATGAGGAAGTCAGTTTTTACAAGGCTCAGCTCAGTCCGTGTGGTTCAGTGAAGGTTCCCTACCCCTACAGAGATGAGATGCAACATGTGGGGGTGGTATCAACAAGATGGGAGGAGAGAaccggagaggagagagggactagaGAGTACAAGAAGGTGATGAGGACTTAATGAGAAGGCCTCTTCCCCCAAACAGAAAGCAGGGGTCTAACATAAGTAATACCTAATTTAAAAACAGATGCCCCTGCTCAACTGTGCCCCTCCGTCCGCCCTCCAACACGTTGCTGTGCTTGCGTGTTTGGGGAGGATAAGTCTTCAACatggagggggggaggggttTAAGGCCTCGTCCCCAAGCTGCACCTCCACCATGCTGCCAATGTTGCGGAGACTCTAGCTAGCTGCTCGTTTATGCACTCAATAAATACAGCATAAAATATTTTGCAATATATATTTCATATACATattaaaaataacatttaaatagGAGGACAAAATAAAATGTTCGGCTCAAGTCAGATAAGtgttaagacaaaaaaaaactaaacaagagAATCTTAGTTATACTTCCGTCTCTAAAACAGTTATGAGAATATCATAATCAGGTATTAATCAAGCATTATACTGTAATAACCAAAGCAATATTTGCAGTTTCTCCTCTCATGTAGTATAACGTATGCAGCATATAAAGGTAAGTGAGGCGCATTGTTTTTTTAATCTCTTGTAAAAAAGATACCACCTCCCTGGACTGATGGGTACCCCAAATGACTCATACAGACCCTCTGAGTCTTATTCCACACCCGAACTGCCCCAAAACCCCAATGAAAGTGGGCCCACTATCCTTCCATTAAGGACAAGAGACACGCGGCAGGGTGAGGCATTGCACTGGGATGAGAATGCCATGCCGACATCCTAATGCGAATGCCATTACTTCCAACTTCCTTACATTGAAACACTTAAAAACCGTTGGTGGTTTCAGATTCTTAATGAGAAACCACAAAACGCAGGCCGACTCAAAACAGTCATCATCATCAGCGGAGTCACATGAGCTGGAGGCACACCTTTAAAATGACCACTTAGTAGCGATAGTAACCGTTTTGTTTGGTGTCGTAATCCAATTCCCAGAGGAGGAAAATCTCCTCAAATCACATAACAAGTCCTCGACACGCCACTGTATCTGGGAGGCGGGGATTGGAGGAGGTACAAAGACAGAAAACGTTGTGGCTGTGTGTCCGAGTGAGAGTGGCAGTCTATAAAGTGCTGTGCTATGTTCGTCATTCGTGGCCCAggctgtgtcacacacacacacatcggttTTAACTATGACCTCACTTGTCAACGCAAGTTCCACTGTAGCAACCAACCGAGTCGATTGGTCCAAACTCAAAATGCACCACTAAGTGAACGCTCAACCACAATCATATACTCTGTCTTTATGCATCTTGGTATGCGTGCATACATATAAataatgtgtgtgtactgtgcatGTGTTTCTGCATTGCAAtgcttttatatttttcttcaaaaATGAGATAAACGTCTTTGCCATTTGACTTTTGTTTTACAGCACCACCATAAAGAAAGGCACTTCCTGTGGACTTCACTCTGCCATAGATTTACCTTCCGCGCCGAAAAGGACATACAACTCAAAATCCAGTATATCTGTGCGTCACAGGCAATGGAATGAACACACATAGCTACTTTTCCATAGAGTATAGCAATCTCTGGGTTGATGTTTAAGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU157925 lncRNA upstream 13859 36129897 ~ 36130119 (+) True G137190
TU157918 lncRNA upstream 17741 36125914 ~ 36126237 (+) True G137183
TU157801 lncRNA upstream 20749 36118200 ~ 36123229 (+) True LOC110533753
TU157799 lncRNA upstream 27110 36116661 ~ 36116868 (+) True G137070
TU157796 lncRNA upstream 29560 36114187 ~ 36114418 (+) True G137067
TU157942 lncRNA downstream 6207 36153057 ~ 36154498 (+) True G137205
TU157943 lncRNA downstream 8152 36155002 ~ 36155236 (+) True G137206
TU157944 lncRNA downstream 8407 36155257 ~ 36155582 (+) True G137207
TU157947 lncRNA downstream 10888 36157738 ~ 36158260 (+) True G137210
TU157951 lncRNA downstream 16392 36163242 ~ 36163509 (+) True G137214
XR_005034524.1 mRNA upstream 21728 36118066 ~ 36122250 (+) False LOC110533753
XM_021561090.2 mRNA upstream 30856 36109289 ~ 36113122 (+) True LOC110488747
XM_036947247.1 mRNA upstream 74566 35928900 ~ 36069412 (+) True iglon5
XM_036947245.1 mRNA upstream 278709 35855203 ~ 35865269 (+) False LOC100653444
XM_021561032.2 mRNA upstream 287558 35855203 ~ 35856420 (+) False LOC100653444
XM_021561206.2 mRNA downstream 70170 36217020 ~ 36227769 (+) False LOC110488805
XM_021561216.2 mRNA downstream 70234 36217084 ~ 36227769 (+) False LOC110488805
XM_021561231.2 mRNA downstream 70271 36217121 ~ 36227769 (+) False LOC110488805
XM_036947352.1 mRNA downstream 70271 36217121 ~ 36227769 (+) False LOC110488805
XM_036947357.1 mRNA downstream 70271 36217121 ~ 36227769 (+) False LOC110488805
TU157787 other upstream 43701 36099611 ~ 36100277 (+) True G137058
TU157722 other upstream 106237 35982832 ~ 36037741 (+) True G136994
TU157485 other upstream 287578 35855149 ~ 35856400 (+) False LOC100653444
TU157486 other upstream 287578 35855228 ~ 35856400 (+) False LOC100653444
TU157479 other upstream 356508 35785691 ~ 35787470 (+) True LOC110488639
TU158178 other downstream 235042 36381892 ~ 36385856 (+) False LOC110488849
TU158176 other downstream 248436 36395286 ~ 36401971 (+) True LOC110488849
TU159857 other downstream 1630211 37777061 ~ 37824010 (+) False G139004
TU159860 other downstream 1630211 37777061 ~ 37824010 (+) False G139004
TU159861 other downstream 1630211 37777061 ~ 37824010 (+) False G139004

Expression Profile