RNA id: TU157944


Basic Information

Item Value
RNA id TU157944
length 326
lncRNA type antisense_over
GC content 0.38
exon number 1
gene id G137207
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 36155257 ~ 36155582 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACCGTTGGTGGGGCACCAGGATATTGTTGATTCCCCCCAGCTTGACATTGATCTTGAGGCAGAGGTTGGAGAGGGTCTGGGGGGACGTCTTCACCACGTTCTTCACCTGGACACACTGAGTGGCCATTCCTAGGAGAGTATCTCCCACCCTCTTCACCTCCGCTACACAGGACCAGTAACAGACAGTGATCAATCAATCTCTGTGCAATTAACAGTCAGTCAGATTAGGGAAGTAAAGAGTAAGGTACCACCTATGCTTTAAAAGGGAAGGTATTGATATATAAGATAGTGTAAATCTGTCTGGTAACACACATCCCTTATCAAAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU157943 lncRNA upstream 21 36155002 ~ 36155236 (+) True G137206
TU157942 lncRNA upstream 759 36153057 ~ 36154498 (+) True G137205
TU157938 lncRNA upstream 8407 36143978 ~ 36146850 (+) False G137203
TU157939 lncRNA upstream 9724 36143920 ~ 36145533 (+) False G137203
TU157940 lncRNA upstream 10240 36143978 ~ 36145017 (+) True G137203
TU157947 lncRNA downstream 2156 36157738 ~ 36158260 (+) True G137210
TU157951 lncRNA downstream 7660 36163242 ~ 36163509 (+) True G137214
TU157952 lncRNA downstream 8533 36164115 ~ 36164469 (+) True G137215
TU157962 lncRNA downstream 19550 36175132 ~ 36175882 (+) True G137225
TU157964 lncRNA downstream 20418 36176000 ~ 36176277 (+) True G137227
XR_005034524.1 mRNA upstream 33007 36118066 ~ 36122250 (+) False LOC110533753
XM_021561090.2 mRNA upstream 42135 36109289 ~ 36113122 (+) True LOC110488747
XM_036947247.1 mRNA upstream 85845 35928900 ~ 36069412 (+) True iglon5
XM_036947245.1 mRNA upstream 289988 35855203 ~ 35865269 (+) False LOC100653444
XM_021561032.2 mRNA upstream 298837 35855203 ~ 35856420 (+) False LOC100653444
XM_021561206.2 mRNA downstream 61438 36217020 ~ 36227769 (+) False LOC110488805
XM_021561216.2 mRNA downstream 61502 36217084 ~ 36227769 (+) False LOC110488805
XM_021561231.2 mRNA downstream 61539 36217121 ~ 36227769 (+) False LOC110488805
XM_036947352.1 mRNA downstream 61539 36217121 ~ 36227769 (+) False LOC110488805
XM_036947357.1 mRNA downstream 61539 36217121 ~ 36227769 (+) False LOC110488805
TU157787 other upstream 54980 36099611 ~ 36100277 (+) True G137058
TU157722 other upstream 117516 35982832 ~ 36037741 (+) True G136994
TU157485 other upstream 298857 35855149 ~ 35856400 (+) False LOC100653444
TU157486 other upstream 298857 35855228 ~ 35856400 (+) False LOC100653444
TU157479 other upstream 367787 35785691 ~ 35787470 (+) True LOC110488639
TU158178 other downstream 226310 36381892 ~ 36385856 (+) False LOC110488849
TU158176 other downstream 239704 36395286 ~ 36401971 (+) True LOC110488849
TU159857 other downstream 1621479 37777061 ~ 37824010 (+) False G139004
TU159860 other downstream 1621479 37777061 ~ 37824010 (+) False G139004
TU159861 other downstream 1621479 37777061 ~ 37824010 (+) False G139004

Expression Profile