RNA id: TU157951


Basic Information

Item Value
RNA id TU157951
length 268
lncRNA type antisense_over
GC content 0.37
exon number 1
gene id G137214
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 36163242 ~ 36163509 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTTACACACCTGCAGGGACACAGCACAAAAGCATTGAGTATATTGCAAAGCATTTTATTCACACTATTTGGCCAAACTGAAGCCACGCTaaaaaggacaatgtgaaaagacAATATCCGAGCCATCACAGTACGGTTTGGGTCGGTCCTATAGTGTGAATCAGGCAAAGAAATGAATATTTCTCACCTCCAGGGGCAGGTAGGTGTGCTTCTGCTCCTGCCCCACCTGGAGGCAGGGTAGGTGGGGATACTTGAGCTGCAGGCTATAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU157947 lncRNA upstream 4982 36157738 ~ 36158260 (+) True G137210
TU157944 lncRNA upstream 7660 36155257 ~ 36155582 (+) True G137207
TU157943 lncRNA upstream 8006 36155002 ~ 36155236 (+) True G137206
TU157942 lncRNA upstream 8744 36153057 ~ 36154498 (+) True G137205
TU157938 lncRNA upstream 16392 36143978 ~ 36146850 (+) False G137203
TU157952 lncRNA downstream 606 36164115 ~ 36164469 (+) True G137215
TU157962 lncRNA downstream 11623 36175132 ~ 36175882 (+) True G137225
TU157964 lncRNA downstream 12491 36176000 ~ 36176277 (+) True G137227
TU157977 lncRNA downstream 23356 36186865 ~ 36187081 (+) True G137237
TU157978 lncRNA downstream 23934 36187443 ~ 36187679 (+) True G137238
XR_005034524.1 mRNA upstream 40992 36118066 ~ 36122250 (+) False LOC110533753
XM_021561090.2 mRNA upstream 50120 36109289 ~ 36113122 (+) True LOC110488747
XM_036947247.1 mRNA upstream 93830 35928900 ~ 36069412 (+) True iglon5
XM_036947245.1 mRNA upstream 297973 35855203 ~ 35865269 (+) False LOC100653444
XM_021561032.2 mRNA upstream 306822 35855203 ~ 35856420 (+) False LOC100653444
XM_021561206.2 mRNA downstream 53511 36217020 ~ 36227769 (+) False LOC110488805
XM_021561216.2 mRNA downstream 53575 36217084 ~ 36227769 (+) False LOC110488805
XM_021561231.2 mRNA downstream 53612 36217121 ~ 36227769 (+) False LOC110488805
XM_036947352.1 mRNA downstream 53612 36217121 ~ 36227769 (+) False LOC110488805
XM_036947357.1 mRNA downstream 53612 36217121 ~ 36227769 (+) False LOC110488805
TU157787 other upstream 62965 36099611 ~ 36100277 (+) True G137058
TU157722 other upstream 125501 35982832 ~ 36037741 (+) True G136994
TU157485 other upstream 306842 35855149 ~ 35856400 (+) False LOC100653444
TU157486 other upstream 306842 35855228 ~ 35856400 (+) False LOC100653444
TU157479 other upstream 375772 35785691 ~ 35787470 (+) True LOC110488639
TU158178 other downstream 218383 36381892 ~ 36385856 (+) False LOC110488849
TU158176 other downstream 231777 36395286 ~ 36401971 (+) True LOC110488849
TU159857 other downstream 1613552 37777061 ~ 37824010 (+) False G139004
TU159860 other downstream 1613552 37777061 ~ 37824010 (+) False G139004
TU159861 other downstream 1613552 37777061 ~ 37824010 (+) False G139004

Expression Profile