RNA id: TU157978


Basic Information

Item Value
RNA id TU157978
length 237
lncRNA type intronic
GC content 0.42
exon number 1
gene id G137238
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 36187443 ~ 36187679 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gtatagagatgaATAGTCCTATAAAAGCTACAAagtaaaacttcttacctgggaatattgaagactcatgttaaaaggaaccaccagcttttatatattctcatgttctgagcaaggaacttaaacgttagctttttttacatggcacatattgcacttttactctTCTCCAAcaactgtttttgcattatttaaaccaaattgaacatgattaatttatttgagactaaatagatg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU157977 lncRNA upstream 362 36186865 ~ 36187081 (+) True G137237
TU157964 lncRNA upstream 11166 36176000 ~ 36176277 (+) True G137227
TU157962 lncRNA upstream 11561 36175132 ~ 36175882 (+) True G137225
TU157952 lncRNA upstream 22974 36164115 ~ 36164469 (+) True G137215
TU157951 lncRNA upstream 23934 36163242 ~ 36163509 (+) True G137214
TU157979 lncRNA downstream 356 36188035 ~ 36188764 (+) True G137239
TU157973 lncRNA downstream 1587 36189266 ~ 36192683 (+) False G137234
TU157974 lncRNA downstream 1947 36189626 ~ 36192683 (+) True G137234
TU157976 lncRNA downstream 8374 36196053 ~ 36196517 (+) True G137236
TU157980 lncRNA downstream 9669 36197348 ~ 36197577 (+) True G137240
XR_005034524.1 mRNA upstream 65193 36118066 ~ 36122250 (+) False LOC110533753
XM_021561090.2 mRNA upstream 74321 36109289 ~ 36113122 (+) True LOC110488747
XM_036947247.1 mRNA upstream 118031 35928900 ~ 36069412 (+) True iglon5
XM_036947245.1 mRNA upstream 322174 35855203 ~ 35865269 (+) False LOC100653444
XM_021561032.2 mRNA upstream 331023 35855203 ~ 35856420 (+) False LOC100653444
XM_021561206.2 mRNA downstream 29341 36217020 ~ 36227769 (+) False LOC110488805
XM_021561216.2 mRNA downstream 29405 36217084 ~ 36227769 (+) False LOC110488805
XM_021561231.2 mRNA downstream 29442 36217121 ~ 36227769 (+) False LOC110488805
XM_036947352.1 mRNA downstream 29442 36217121 ~ 36227769 (+) False LOC110488805
XM_036947357.1 mRNA downstream 29442 36217121 ~ 36227769 (+) False LOC110488805
TU157787 other upstream 87166 36099611 ~ 36100277 (+) True G137058
TU157722 other upstream 149702 35982832 ~ 36037741 (+) True G136994
TU157485 other upstream 331043 35855149 ~ 35856400 (+) False LOC100653444
TU157486 other upstream 331043 35855228 ~ 35856400 (+) False LOC100653444
TU157479 other upstream 399973 35785691 ~ 35787470 (+) True LOC110488639
TU158178 other downstream 194213 36381892 ~ 36385856 (+) False LOC110488849
TU158176 other downstream 207607 36395286 ~ 36401971 (+) True LOC110488849
TU159857 other downstream 1589382 37777061 ~ 37824010 (+) False G139004
TU159860 other downstream 1589382 37777061 ~ 37824010 (+) False G139004
TU159861 other downstream 1589382 37777061 ~ 37824010 (+) False G139004

Expression Profile