RNA id: TU157974


Basic Information

Item Value
RNA id TU157974
length 3033
lncRNA type antisense_over
GC content 0.47
exon number 2
gene id G137234
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 36189266 ~ 36192683 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTCCCCAACAGAGTCCCCATACTATTACACCATACAGAGCCAAAATAAGTTGCTTCCATTTCCTTTCATTCAACCTATTGGGAAGTGCTATGACAAAGACTGTTCTTGATCAGTGGCTTTTATATTGCTTAGTCAGTGTGGAGCAGATTCGCTTGTGTCCTCATCATGATGCTTTTCCCAGAGTGAAGATAAGAACTGCATCTGGATCAGTGGCGCTGGGCTTACCCAAGCTGAATTTGAACACAGAGGGGCTTGGGGGGGACTAACCCCAACTGCAAAGGCCCCGCTACATTGGTGAGCCCAAATTCATTACAGGTTATATACAAATTACCTGGGACATGTGGGGTCAGTAAAATGGTGTACAAAAGCATTTTGATTGCGTAAATTCATAAACATGAATTCCTCTATCGTCATTCCCTTCCAACATAAAGGGGCTCTACAACCCATCAGACATGTTTGGAGGCGCTTGAAGGCCAAGAAGTGAAAGTCGTCAGACTACTTTTCGCATAGTACCTTGAGGATCCACTCTGACACTACTCAACACAATACAGAAAACAAAAAGCAGCCTTTCAGTTCACCGTTTACACAAAAGAGGCTATGACTGAAAGGCAGAAGTGAGCGTAATAAGCTCCTAGGAAAACTAAGGTGGCTCAGAATACCCAGTCATAATAAAAATGTGTTTCATGCATTTCATAAAGTCAGAAAGTGATCAGAAGTGAAGGCAGAGCATATTGAGTAAGTACCCCCCAATAACCTGTGTAGCAAACCCCTATCTGTGTTGTCCATGCACACAGCGCACCAATGGGGAATCATACACTAGGCTGGGAGGAGGGGAGCTGAGGCAGAGGGTTGAGCGGGGTATGGTTAGGGGAAAAATGGGTGGTGGTGTTGGAAGGAGGGGGCAAGTATTCATGTGGGAGTATTAAGGGGGCAAGTGCATGCATGGATGCGGCTCGGTACACACTCCGTAGGAGAATGTGACAGGGTGAGGAGGCATGAGTGTGCTTGTGTTGACGATGGTGTGGTCGATGTCTGTAGGTAGGACAAGCTATTTACAATATTAAAAAAAGAGACGCTGTGTGcgcgtacagtgtgtgtgtgtgtatgtcaacgTAGTGTTTTGGTGTACGTCGTCTCCATTGACATAGGTTGGAATGTGTACCTAGAATGTGTAGAATGATCATGTAGCCAAGGTCAAGTGCTAAAAGTGAGGGAGAAACACTTCATTCAGTGTTCTCTGGCCCACGTCTTTTTGCAGCTTTCACACCTACAAAGACAAGATGAagaccttgtattgctactgttACTCTATTGGTTCAGCAAGCTTAGAGAGGTTGTAGGTGTGAGAATATGTAttatgtaggtaggtaggggtGTGTGTAGGCCTGTGTGTGAAGCCTCAGGGAAGACAAATCTCCCCATTCTGAAGTAACAAACCAATCAGGTAAAGAAAGTGCCTCGTAATTCCTCCGTAGAGTAAATGCATTCTGACACAAAATATTATCTTCTTCCTGTTTACATAGGTGCCCATTTTCCATTGGTAAGCATCACATTAggctggataataataataataatgctggTTTAGGTGCATGGGGTGTGAGTATATTCAATACACTCAATGCAATGGTCCCTCTAACTTCTACATTGACCTCTCTCTACTGGCTAATTCTAAGAGGAGACTCCCAACCTGCACAGATGAAGTGAAGAAGCACTTAGTCTAATGTATCTACAACATgctacacctgctctttctatttCCACAATTAAGAGCAGAGGGCTAGtctcacacagacaaacacttcATATAGGTGCAGGGTGAGCGGCGTTGACTACATGCTAATCTCTAAGTGCTAATGTACCATACATCCCGTTGCGCGCATCAAAGccataaaaaaaagagagaatggCAACATAAGAATGGAGTTCATGATAAAAAGTTAACAATAATAAGTGTGTCCTTTTTGTCACCCTTCTCCCGCCCAGGGTTCCCCTGACTCCTGTTGTACCAGGGGCTTGGAACAGAACACTGGCATCCGCCACGCGGATAGGTAAGAGGCAGCATTGTGGTGGCAGTCAAAAGTCTCGGGGCAGCTCAGCGCCCGTTTTCCTCCCCTCCGTATTGCATACATAGGAGTGTGGAAGGTCGCATACAATACAATAATACCCTCTTTTTGTTTTTAAGTCAACATAAAAACATAGTCCTGGgaaagtaaataaaaaataaacatataatatcaataatgataataataactgTAGTGCAGGACGCTGCAGAGTCTGCCTGGGTTGATCAGGTGAGGGATGTATAGTTCTGGTACTGGGGTGGTTTGGctgtggtgggtcagtcatgagaGGGTATGTGGAGTGTGTGGGTGGTCACAGtcatggagggaggaggaaaggtgGAAGGCTTCCTGTGGGCTCCCAGGCCCCTCACCGAGGGATGGTGAGTCTTAAGGAcagtggtggtggcggtggtgtggGGTGGTGCTCAGGCGAAGTACATGGTCCTCAGCGTGTCGTGGTGAATCTGCACCGCCTTGGCCAGAGCCTGGGGGTCCCGACCGTTACTCTGACCAGAGACATGGCTCCCCTCCCCACTACAGtatggacagaaagacacaggaCGCAATAAGTACCGAATAAGATCTGGAAATGTTATGGTGCTTACCCTTTTCATTAATTTTAGGTTGAGGCATACAGCTGGATCTACAAAACCGATGGCATGGAACTTGAATTCATCTTAACATTAGACTACATTTGAAGTCAACATCTGACAACAGATTTAAGTGGAACGTCCCTCTAAATGTTAACTAGACCACCATGCTCACCTGTCATGCTCCTTGTCCACCAGATGGTAGCGGGCACGGAAGGCCACAAGGCGGGCATAGTAGGCTGGCGCGGGGATGGAGACGGAGCGGGTACAGCGCACGTAGGTGTGGCACAGCTGGTAGGTGAGGATTTGCAGCTCGTCGGCGGTGAAACGATTGTCGTCCCACAGGACGTAGTAATGTGAGGGCCGACTAGTCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU157979 lncRNA upstream 862 36188035 ~ 36188764 (+) True G137239
TU157978 lncRNA upstream 1947 36187443 ~ 36187679 (+) True G137238
TU157977 lncRNA upstream 2545 36186865 ~ 36187081 (+) True G137237
TU157964 lncRNA upstream 13349 36176000 ~ 36176277 (+) True G137227
TU157962 lncRNA upstream 13744 36175132 ~ 36175882 (+) True G137225
TU157976 lncRNA downstream 3370 36196053 ~ 36196517 (+) True G137236
TU157980 lncRNA downstream 4665 36197348 ~ 36197577 (+) True G137240
TU157990 lncRNA downstream 9805 36202488 ~ 36207731 (+) True G137245
TU157960 lncRNA downstream 17329 36210012 ~ 36210308 (+) True G137223
TU157994 lncRNA downstream 20795 36213478 ~ 36213816 (+) True G137249
XR_005034524.1 mRNA upstream 67376 36118066 ~ 36122250 (+) False LOC110533753
XM_021561090.2 mRNA upstream 76504 36109289 ~ 36113122 (+) True LOC110488747
XM_036947247.1 mRNA upstream 120214 35928900 ~ 36069412 (+) True iglon5
XM_036947245.1 mRNA upstream 324357 35855203 ~ 35865269 (+) False LOC100653444
XM_021561032.2 mRNA upstream 333206 35855203 ~ 35856420 (+) False LOC100653444
XM_021561206.2 mRNA downstream 24337 36217020 ~ 36227769 (+) False LOC110488805
XM_021561216.2 mRNA downstream 24401 36217084 ~ 36227769 (+) False LOC110488805
XM_021561231.2 mRNA downstream 24438 36217121 ~ 36227769 (+) False LOC110488805
XM_036947352.1 mRNA downstream 24438 36217121 ~ 36227769 (+) False LOC110488805
XM_036947357.1 mRNA downstream 24438 36217121 ~ 36227769 (+) False LOC110488805
TU157787 other upstream 89349 36099611 ~ 36100277 (+) True G137058
TU157722 other upstream 151885 35982832 ~ 36037741 (+) True G136994
TU157485 other upstream 333226 35855149 ~ 35856400 (+) False LOC100653444
TU157486 other upstream 333226 35855228 ~ 35856400 (+) False LOC100653444
TU157479 other upstream 402156 35785691 ~ 35787470 (+) True LOC110488639
TU158178 other downstream 189209 36381892 ~ 36385856 (+) False LOC110488849
TU158176 other downstream 202603 36395286 ~ 36401971 (+) True LOC110488849
TU159857 other downstream 1584378 37777061 ~ 37824010 (+) False G139004
TU159860 other downstream 1584378 37777061 ~ 37824010 (+) False G139004
TU159861 other downstream 1584378 37777061 ~ 37824010 (+) False G139004

Expression Profile