RNA id: TU158005


Basic Information

Item Value
RNA id TU158005
length 1393
lncRNA type inter_gene
GC content 0.45
exon number 1
gene id G137257
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 36251342 ~ 36252734 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACTGTTAACACTTTTTGAAAAATATTGTCGCTTTCCCCCCGAATCATCTTCAGTCAGGCGGATAGCTTGATCAACTGGGGATCACACCAAAATCGCTCTTGTTTATTCGTCGCAAGCCCAGAGAAGGCAGATTGGAGCCTGCTATTCTGCATGATTCCTCCTTAACGAGTCAGGGCGGGGGCGAAAGCTAATGCTAGAGAATGCATGCTCATTGCTCGCTCAGACGCTCTCTGGCAGATGTGATGCCCTGTGACAGGCCAGAGACGGGGCCTCGTTGGGTGACACGTGCCCTTCTGCCCATGGCACGAGATCCTCCCCCTCCGCCCTACGTCCTGTCTCGCCCATCACTGGGCAAAAACACCACTTTGGTGTCTCCATGACGCAAGCCTGGAACAACAAACCTAAAAGAAGCGTTCTCATTGGCTATCCGGTGATGCGTCACAGAAATCAGCCCAGATATGAGCAGCAGAGACAAAGGGATGGGGTTCAGGTTGGTGGGGGAGAAATTCAGGGCTGGGGAAACATCTACTGCTATTATGCTCCAACATGTTTCCTTTTTAACcataagggagggaggaggtcaaagaatAGCACTTAGGAGAGAAGTGAGAACAAAGTGGTCTAATTGTAACAATTCTTGAGGGATAGGATTTGTAAGTTAAGGTTCGAGAAATGGCTTTGTAGATGTTTTGTAGGTATGTAAATTCAACCTCCGATTTCACTCATGTAAAAGTGGCTTAGCTTTGGCTAAAACTGTCCATCGCATGAAGCCAAGGGGTAAAAGGAAAACGTGCAAAGATCATTATGAAAAATGCATCCACCTATGTTTGTATCCAATCATTGAAATGCATCCACTTATGTTTGTATCCAACACATTGAACTATTTCTAAATGAAGTAACTATCCCCAGACATTGAAATATCTGTGAATGGTATAGATTTTGTGGTTGCAATGTCAAAAGTTTGTTCTCTGTTGTAGTTGTGTAAAAGACTCTGCCACAACAGAGCAATGGAGTTTGAATGAGAAGTATGGAGAGAGTTTTGGGGGAATTTGGTTTGTACTGCCAACACTGAATAATCCACAAGGGTGTCTCTAGGCGGTCTCtaattgtaagtcactctggttaagcgcgtctgctaaatgacaaatgttTCAAATGGGCCTATCTAGCTCATTAAGTATCGGTCTTCCTCTGTTAGCCCAGCCTCTTTGGCACCAATGTGTGTAAGCACCATATACACCACCCCAAAAGATGGGATGAAGGAAAGGGTGTGTGTTTTCTGCAAATGCTATGTGGTGCCTGAGTGGGTTGGCCAACCCCAGTCCCTTTCCCTACTAAATTATTTGTTGTATTGCTAGTCCTCTGTTTCTGTGATCATTGATTCTAGTCCTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU158002 lncRNA upstream 2660 36243604 ~ 36248682 (+) False G137256
TU158003 lncRNA upstream 2660 36243604 ~ 36248682 (+) False G137256
TU158004 lncRNA upstream 2660 36243604 ~ 36248682 (+) True G137256
TU157999 lncRNA upstream 18155 36229498 ~ 36233187 (+) False LOC101268898
TU158000 lncRNA upstream 18155 36229498 ~ 36233187 (+) True LOC101268898
TU158013 lncRNA downstream 2526 36255260 ~ 36255446 (+) True G137265
TU158014 lncRNA downstream 4158 36256892 ~ 36257096 (+) True G137266
TU158022 lncRNA downstream 12894 36265628 ~ 36265874 (+) True G137274
TU158023 lncRNA downstream 13834 36266568 ~ 36266828 (+) True G137275
TU158028 lncRNA downstream 18203 36270937 ~ 36271182 (+) True G137280
XR_002468485.2 mRNA upstream 18180 36229515 ~ 36233162 (+) False LOC101268898
XM_021561231.2 mRNA upstream 23573 36217121 ~ 36227769 (+) False LOC110488805
XM_036933854.1 mRNA downstream 23007 36275741 ~ 36278586 (+) True LOC118936744
XM_036947374.1 mRNA downstream 102149 36354883 ~ 36405310 (+) False LOC110488849
XM_036947400.1 mRNA downstream 168017 36420751 ~ 36656060 (+) False LOC110488866
XM_036947408.1 mRNA downstream 168019 36420753 ~ 36656060 (+) True LOC110488866
XR_002468497.2 mRNA downstream 459350 36712084 ~ 36715233 (+) False LOC110488878
TU157787 other upstream 151065 36099611 ~ 36100277 (+) True G137058
TU157722 other upstream 213601 35982832 ~ 36037741 (+) True G136994
TU157485 other upstream 394942 35855149 ~ 35856400 (+) False LOC100653444
TU157486 other upstream 394942 35855228 ~ 35856400 (+) False LOC100653444
TU157479 other upstream 463872 35785691 ~ 35787470 (+) True LOC110488639
TU158178 other downstream 129158 36381892 ~ 36385856 (+) False LOC110488849
TU158176 other downstream 142552 36395286 ~ 36401971 (+) True LOC110488849
TU159857 other downstream 1524327 37777061 ~ 37824010 (+) False G139004
TU159860 other downstream 1524327 37777061 ~ 37824010 (+) False G139004
TU159861 other downstream 1524327 37777061 ~ 37824010 (+) False G139004

Expression Profile