RNA id: TU158022


Basic Information

Item Value
RNA id TU158022
length 247
lncRNA type inter_gene
GC content 0.52
exon number 1
gene id G137274
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 36265628 ~ 36265874 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

atgcaaatagtccgggtagccatttaattacctgttcaggagtcttatggcttgggggtaaaagctgttgagaagcctcttggtcctaggcttggccctccggtactgcttgccatgagGTAGTAgtgagaacagtctgtggctggggtctttgaccatttttagggccttcctctgacaccgcctggtgtagtggtcctggatggcaggcagtgatgtactaggccgtaggcactaccctctgtat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU158014 lncRNA upstream 8532 36256892 ~ 36257096 (+) True G137266
TU158013 lncRNA upstream 10182 36255260 ~ 36255446 (+) True G137265
TU158005 lncRNA upstream 12894 36251342 ~ 36252734 (+) True G137257
TU158002 lncRNA upstream 16946 36243604 ~ 36248682 (+) False G137256
TU158023 lncRNA downstream 694 36266568 ~ 36266828 (+) True G137275
TU158028 lncRNA downstream 5063 36270937 ~ 36271182 (+) True G137280
TU158046 lncRNA downstream 32246 36298120 ~ 36300071 (+) True G137298
TU158193 lncRNA downstream 98198 36364072 ~ 36364287 (+) True G137433
TU158206 lncRNA downstream 123653 36389527 ~ 36389806 (+) True G137446
XR_002468485.2 mRNA upstream 32466 36229515 ~ 36233162 (+) False LOC101268898
XM_021561231.2 mRNA upstream 37859 36217121 ~ 36227769 (+) False LOC110488805
XM_036933854.1 mRNA downstream 9867 36275741 ~ 36278586 (+) True LOC118936744
XM_036947374.1 mRNA downstream 89009 36354883 ~ 36405310 (+) False LOC110488849
XM_036947400.1 mRNA downstream 154877 36420751 ~ 36656060 (+) False LOC110488866
XM_036947408.1 mRNA downstream 154879 36420753 ~ 36656060 (+) True LOC110488866
XR_002468497.2 mRNA downstream 446210 36712084 ~ 36715233 (+) False LOC110488878
TU157787 other upstream 165351 36099611 ~ 36100277 (+) True G137058
TU157722 other upstream 227887 35982832 ~ 36037741 (+) True G136994
TU157485 other upstream 409228 35855149 ~ 35856400 (+) False LOC100653444
TU157486 other upstream 409228 35855228 ~ 35856400 (+) False LOC100653444
TU157479 other upstream 478158 35785691 ~ 35787470 (+) True LOC110488639
TU158178 other downstream 116018 36381892 ~ 36385856 (+) False LOC110488849
TU158176 other downstream 129412 36395286 ~ 36401971 (+) True LOC110488849
TU159857 other downstream 1511187 37777061 ~ 37824010 (+) False G139004
TU159860 other downstream 1511187 37777061 ~ 37824010 (+) False G139004
TU159861 other downstream 1511187 37777061 ~ 37824010 (+) False G139004

Expression Profile