RNA id: TU158023


Basic Information

Item Value
RNA id TU158023
length 261
lncRNA type inter_gene
GC content 0.50
exon number 1
gene id G137275
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 36266568 ~ 36266828 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

atgaatagcattctcacgtaggtgttccttttgtccaggtgggaaagggcagtgtggatggagtgcaatagagattgcatcatctgtggatgtgtttgggcgatatgcaaattggagtggttctagggtttctgggataatggtgttgatgtgagccattaccagcctttcaaagcacttcatggctacggacgtgagtgctacgggtctgtagtaatttaggcaggtttccttagttttcttgggcacagggactatggt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU158022 lncRNA upstream 694 36265628 ~ 36265874 (+) True G137274
TU158014 lncRNA upstream 9472 36256892 ~ 36257096 (+) True G137266
TU158013 lncRNA upstream 11122 36255260 ~ 36255446 (+) True G137265
TU158005 lncRNA upstream 13834 36251342 ~ 36252734 (+) True G137257
TU158003 lncRNA upstream 17886 36243604 ~ 36248682 (+) False G137256
TU158028 lncRNA downstream 4109 36270937 ~ 36271182 (+) True G137280
TU158046 lncRNA downstream 31292 36298120 ~ 36300071 (+) True G137298
TU158193 lncRNA downstream 97244 36364072 ~ 36364287 (+) True G137433
TU158206 lncRNA downstream 122699 36389527 ~ 36389806 (+) True G137446
TU158207 lncRNA downstream 124295 36391123 ~ 36391888 (+) True G137447
XR_002468485.2 mRNA upstream 33406 36229515 ~ 36233162 (+) False LOC101268898
XM_021561231.2 mRNA upstream 38799 36217121 ~ 36227769 (+) False LOC110488805
XM_036933854.1 mRNA downstream 8913 36275741 ~ 36278586 (+) True LOC118936744
XM_036947374.1 mRNA downstream 88055 36354883 ~ 36405310 (+) False LOC110488849
XM_036947400.1 mRNA downstream 153923 36420751 ~ 36656060 (+) False LOC110488866
XM_036947408.1 mRNA downstream 153925 36420753 ~ 36656060 (+) True LOC110488866
XR_002468497.2 mRNA downstream 445256 36712084 ~ 36715233 (+) False LOC110488878
TU157787 other upstream 166291 36099611 ~ 36100277 (+) True G137058
TU157722 other upstream 228827 35982832 ~ 36037741 (+) True G136994
TU157485 other upstream 410168 35855149 ~ 35856400 (+) False LOC100653444
TU157486 other upstream 410168 35855228 ~ 35856400 (+) False LOC100653444
TU157479 other upstream 479098 35785691 ~ 35787470 (+) True LOC110488639
TU158178 other downstream 115064 36381892 ~ 36385856 (+) False LOC110488849
TU158176 other downstream 128458 36395286 ~ 36401971 (+) True LOC110488849
TU159857 other downstream 1510233 37777061 ~ 37824010 (+) False G139004
TU159860 other downstream 1510233 37777061 ~ 37824010 (+) False G139004
TU159861 other downstream 1510233 37777061 ~ 37824010 (+) False G139004

Expression Profile