RNA id: TU158046


Basic Information

Item Value
RNA id TU158046
length 1929
lncRNA type antisense_over
GC content 0.47
exon number 2
gene id G137298
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 36298120 ~ 36300071 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTTTGGGGCACTATGCTACTTACAGAGAGAAAACACCATGGCTCTAAAAGGGGTTTGGTTGTTGATTTATTACATAGCCTATCATGTGACCCTCCTCAGGTCCTATATTACTCCACCCAATGACTGTCTCTCCGTGTCACATTCTAACCCGTACATACCACCCGCAGAACTTCAGTGAATTTTTCAGAGGTATCCCTGGGAGAACTCTGATCAAGGTGACGTTTTCATTTCGATAAAAAGGGGCATCACTGACAGATTGATGAAGTGAGGCAGGATCTACAGCTATTAAAAaggtagaggggggagagagggagttctCACCCCCTTACCGTCCTCCCCCAGGCCTAGGGTCTCCTGCGGGGGAGAACCAGATGACCATTGGCCCCAGAGGGGAAAGGAACCCCAACCCCCAAACCAGAGGGAGTCTGGGGGACTCTGTAAACGTCAGCTCTGAGAAGGTGACACCCTCAAATATTTGGCAACCTGATAGCTCATGGTCCCTTACACTTTGTAGCACTTTCTACTATGGTGAAATATGTTACATGACAACAGCAACAAAATAAATCTGTGTTTGTGAGGAATTTAAAATGCCCttttaagttaatattttgtggTAGCGAAGTAAAAAGTCACTTTTTTTCCACAAGGAATTGACCAGTTATCCAGTAAAAATAACTTAGCACACTTTAATTTCTATCCTGCATTGGCAACAAGGTAGCTTACACAGTAGCAACAGATAAAAAGGCAATGCAGAGTTCGCTGCCAGCCAGTTACACAGCTGTAGCTGTCAAAATCAATCACAATTGCGTCACAACTAACGTATCAGTGGTCAGTAGTTGCTGTGTAAGAGTTAGCGCTCTTTGGGGTAAGGTTCAGAGGTGCTGTAGGATCAAAATAACCGACCCTGCATCCCTCCTTGTCTAATACGACTGTCGCGGTAGTACTGTCTCTAGAGTATTATGCTCAGTGTTTAATTGGAGGGGAGTCTCCTATAaagctgtttctctttctctctctctctcactcgtttcctctctctctcactcatttcctccctctctctctcactcgtttcctctctctctctcactcgtttcctctctctctctcactcatttcctccctctctcacttttcGTCCAGTTCAGTGCATTAACGACCCCACAGGGGCCCTCGCGTGTTTGTTCCAACGCCCGcgtttaagaaaaaaaaaagaggcaCCACACAAACTAAACTGGCACAGTTCGGAATGAGGTACTCACGGTTCACTCCAGTTTAGAAAAAAACTCTTGTGGTTTTCCATTCTAAATTATGAATTTGTTCGAGAGAAGAGTGTAGGGTTGTAAATACAGCCTCATCTGTGCCTGTTGTTTTCTCACTGATGCGCCTTATTGTGTGTTGTAGAGTCAGAGCGGAGCTTAGGGGAGGCTGTCAGTCACTATAGATCTGACAATACCTATTGGTTAGGATAGGGAGTGGGCGGGACAGCCATATCCAACACAACcgcacacactcactgacactaACATCTTCAGGGGTAAATGATTCCACTCGAAAATAAGGTGTAGCCCATCCACACCCCTCACTTTCCATAGGACCTATAAATACAGCATATCAACCTGGGAGAAGACTAAGGATTACGGCACAATAACAAAGTCTTCTTTTAGAGAAGTGGTGTCAAACAGTGGACTCTTTGGGCCCCTCCTGTGCTGCGTTCTTGCAGCTGTAGAGCCACTTGATGACACGGGCATTCCTCTCGATGATTGACACCCCCGTGGTCAGCTTCTCGGCCACCTCCTCCTGGAAAAGCCCCGCCTCTCCTGAGTGGCGGGAGAACTCGCTGGGCTCCGAGCCACCGCACCCTCCCCCTATGCTCCTCAGCACCAATGAGAGCGTGTCTACGTCGCTGGCCCCACCCAGGAAGTTCTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU158028 lncRNA upstream 26938 36270937 ~ 36271182 (+) True G137280
TU158023 lncRNA upstream 31292 36266568 ~ 36266828 (+) True G137275
TU158022 lncRNA upstream 32246 36265628 ~ 36265874 (+) True G137274
TU158014 lncRNA upstream 41024 36256892 ~ 36257096 (+) True G137266
TU158013 lncRNA upstream 42674 36255260 ~ 36255446 (+) True G137265
TU158193 lncRNA downstream 64001 36364072 ~ 36364287 (+) True G137433
TU158206 lncRNA downstream 89456 36389527 ~ 36389806 (+) True G137446
TU158207 lncRNA downstream 91052 36391123 ~ 36391888 (+) True G137447
TU158175 lncRNA downstream 114667 36414738 ~ 36415241 (+) True G137415
TU158316 lncRNA downstream 193669 36493740 ~ 36503970 (+) True G137550
XM_036933854.1 mRNA upstream 19534 36275741 ~ 36278586 (+) True LOC118936744
XR_002468485.2 mRNA upstream 64958 36229515 ~ 36233162 (+) False LOC101268898
XM_021561231.2 mRNA upstream 70351 36217121 ~ 36227769 (+) False LOC110488805
XM_036947374.1 mRNA downstream 54812 36354883 ~ 36405310 (+) False LOC110488849
XM_036947400.1 mRNA downstream 120680 36420751 ~ 36656060 (+) False LOC110488866
XM_036947408.1 mRNA downstream 120682 36420753 ~ 36656060 (+) True LOC110488866
XR_002468497.2 mRNA downstream 412013 36712084 ~ 36715233 (+) False LOC110488878
XR_005036565.1 mRNA downstream 412013 36712084 ~ 36715233 (+) False LOC110488878
TU157787 other upstream 197843 36099611 ~ 36100277 (+) True G137058
TU157722 other upstream 260379 35982832 ~ 36037741 (+) True G136994
TU157485 other upstream 441720 35855149 ~ 35856400 (+) False LOC100653444
TU157486 other upstream 441720 35855228 ~ 35856400 (+) False LOC100653444
TU157479 other upstream 510650 35785691 ~ 35787470 (+) True LOC110488639
TU158178 other downstream 81821 36381892 ~ 36385856 (+) False LOC110488849
TU158176 other downstream 95215 36395286 ~ 36401971 (+) True LOC110488849
TU159857 other downstream 1476990 37777061 ~ 37824010 (+) False G139004
TU159860 other downstream 1476990 37777061 ~ 37824010 (+) False G139004
TU159861 other downstream 1476990 37777061 ~ 37824010 (+) False G139004

Expression Profile