RNA id: TU158193


Basic Information

Item Value
RNA id TU158193
length 216
lncRNA type intronic
GC content 0.40
exon number 1
gene id G137433
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 36364072 ~ 36364287 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACCAGTTGTTTGAGAGCTGCGCGTTGTTTCTGCCCAACAGATTGTATTTTGCTCAAGCTAGGCTATTTGTGTGGCGTGCGTGTGTGGTAAATAATCTACATAACAAACTAACAGCTTCTGGAGTTTGTCTTGAttggaaaaaaacaaaacagattcCCTCTTCAATCCATACTGACTGGATATAGATATACAGtgcttttggaaagtattcagacc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU158046 lncRNA upstream 64001 36298120 ~ 36300071 (+) True G137298
TU158028 lncRNA upstream 92890 36270937 ~ 36271182 (+) True G137280
TU158023 lncRNA upstream 97244 36266568 ~ 36266828 (+) True G137275
TU158022 lncRNA upstream 98198 36265628 ~ 36265874 (+) True G137274
TU158014 lncRNA upstream 106976 36256892 ~ 36257096 (+) True G137266
TU158206 lncRNA downstream 25240 36389527 ~ 36389806 (+) True G137446
TU158207 lncRNA downstream 26836 36391123 ~ 36391888 (+) True G137447
TU158175 lncRNA downstream 50451 36414738 ~ 36415241 (+) True G137415
TU158316 lncRNA downstream 129453 36493740 ~ 36503970 (+) True G137550
TU158317 lncRNA downstream 131410 36495697 ~ 36498945 (+) True G137551
XM_036933854.1 mRNA upstream 85486 36275741 ~ 36278586 (+) True LOC118936744
XR_002468485.2 mRNA upstream 130910 36229515 ~ 36233162 (+) False LOC101268898
XM_036947352.1 mRNA upstream 136303 36217121 ~ 36227769 (+) False LOC110488805
XM_036947400.1 mRNA downstream 56464 36420751 ~ 36656060 (+) False LOC110488866
XM_036947408.1 mRNA downstream 56466 36420753 ~ 36656060 (+) True LOC110488866
XR_002468497.2 mRNA downstream 347797 36712084 ~ 36715233 (+) False LOC110488878
XR_005036565.1 mRNA downstream 347797 36712084 ~ 36715233 (+) False LOC110488878
XM_021561331.2 mRNA downstream 356861 36721148 ~ 36732138 (+) True LOC110488885
TU157787 other upstream 263795 36099611 ~ 36100277 (+) True G137058
TU157722 other upstream 326331 35982832 ~ 36037741 (+) True G136994
TU157485 other upstream 507672 35855149 ~ 35856400 (+) False LOC100653444
TU157486 other upstream 507672 35855228 ~ 35856400 (+) False LOC100653444
TU157479 other upstream 576602 35785691 ~ 35787470 (+) True LOC110488639
TU158178 other downstream 17605 36381892 ~ 36385856 (+) False LOC110488849
TU158176 other downstream 30999 36395286 ~ 36401971 (+) True LOC110488849
TU159857 other downstream 1412774 37777061 ~ 37824010 (+) False G139004
TU159860 other downstream 1412774 37777061 ~ 37824010 (+) False G139004
TU159861 other downstream 1412774 37777061 ~ 37824010 (+) False G139004

Expression Profile