RNA id: TU158207


Basic Information

Item Value
RNA id TU158207
length 766
lncRNA type intronic
GC content 0.53
exon number 1
gene id G137447
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 36391123 ~ 36391888 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

acacacacacactggaacggacagatacacacacacacactggaacggacagatacacacacacacactggaacggacagatacacacacacactggaacggacagatacacacacacacacactggaacggacagatacacacacacacactggaacggacagatacacacacacacactggaacggacagatacacacacacacactggaacggacagatacacacacacactggaacggacagatacacacacacactggaacggacagatacacacacacactggaacggacagatacacacacacactggaacggacagatacacacacattggaacggacagacagacacacacactggaacggaaacacacacacacacactggaacggacagacacacacacacactggaacggacagacacacacacacacacactggaacggacagacacacacacacacacacacactggaacggacagacacacacgcactggatcggacacacacacactggatcggacaaacacacacacacacacacacactggatcggacacacacacacacacacactggatcagacacacacacacacacacactggatcggacacacacacacacacacactggatcggacacacacacacacacacacacactggatcggacacacacacacacacacacacacacacacacacacacacacacacacactggatcggacacacacacacacacactggatcggac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU158206 lncRNA upstream 1317 36389527 ~ 36389806 (+) True G137446
TU158193 lncRNA upstream 26836 36364072 ~ 36364287 (+) True G137433
TU158046 lncRNA upstream 91052 36298120 ~ 36300071 (+) True G137298
TU158028 lncRNA upstream 119941 36270937 ~ 36271182 (+) True G137280
TU158023 lncRNA upstream 124295 36266568 ~ 36266828 (+) True G137275
TU158175 lncRNA downstream 22850 36414738 ~ 36415241 (+) True G137415
TU158316 lncRNA downstream 101852 36493740 ~ 36503970 (+) True G137550
TU158317 lncRNA downstream 103809 36495697 ~ 36498945 (+) True G137551
TU158427 lncRNA downstream 295894 36687782 ~ 36688029 (+) True G137657
TU158442 lncRNA downstream 320252 36712140 ~ 36715041 (+) True LOC110488878
XM_036933854.1 mRNA upstream 112537 36275741 ~ 36278586 (+) True LOC118936744
XR_002468485.2 mRNA upstream 157961 36229515 ~ 36233162 (+) False LOC101268898
XM_036947352.1 mRNA upstream 163354 36217121 ~ 36227769 (+) False LOC110488805
XM_036947400.1 mRNA downstream 28863 36420751 ~ 36656060 (+) False LOC110488866
XM_036947408.1 mRNA downstream 28865 36420753 ~ 36656060 (+) True LOC110488866
XR_002468497.2 mRNA downstream 320196 36712084 ~ 36715233 (+) False LOC110488878
XR_005036565.1 mRNA downstream 320196 36712084 ~ 36715233 (+) False LOC110488878
XM_021561331.2 mRNA downstream 329260 36721148 ~ 36732138 (+) True LOC110488885
TU158178 other upstream 5267 36381892 ~ 36385856 (+) False LOC110488849
TU157787 other upstream 290846 36099611 ~ 36100277 (+) True G137058
TU157722 other upstream 353382 35982832 ~ 36037741 (+) True G136994
TU157485 other upstream 534723 35855149 ~ 35856400 (+) False LOC100653444
TU158176 other downstream 3398 36395286 ~ 36401971 (+) True LOC110488849
TU159857 other downstream 1385173 37777061 ~ 37824010 (+) False G139004
TU159860 other downstream 1385173 37777061 ~ 37824010 (+) False G139004
TU159861 other downstream 1385173 37777061 ~ 37824010 (+) False G139004
TU159862 other downstream 1385173 37777061 ~ 37824010 (+) False G139004

Expression Profile