RNA id: TU158175


Basic Information

Item Value
RNA id TU158175
length 504
lncRNA type inter_gene
GC content 0.43
exon number 1
gene id G137415
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 36414738 ~ 36415241 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATGCAACTTGGAAATTCCATCCCCTGGAGTCAGAAGTCAAAGCTGCTAATCTGGCTCTCGAGGATCAAGGCACGACAACTACCAGGATGAAAAACAAACAATTGACGGTGAGCATTTCAGTTACAAGTTACATAGGAGTCTATTGAAATCTCCAGGGGAAAATGCAACACCATTCCTTTTGATCTTACCAAATACTACATGATGAGCAAAGAAAATCATTAGAGACATTCTTTTGTTTTCCTTCCATTAATGAGAACTCGAGGCCGTCGGATCTTCTGTTGAAAGGCCCTGAGAGACATTAGCTACTCCACATCAAAATAGCTGAAGGTAACTCTTCCTGAAGCGTCAAATACCGCAAATATAACATGGACACACCGACCCCTGGGTCACAACTAGCCTCTCCTCTGTAAAGGGTTAAAATAGCAGAATATTGACCAGCAGGAAATACAATGAGCCCCTAGTGTGTAAACCACTACCCTAGGAGCAGGTGAAAATAAGGGTCAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU158207 lncRNA upstream 22850 36391123 ~ 36391888 (+) True G137447
TU158206 lncRNA upstream 24932 36389527 ~ 36389806 (+) True G137446
TU158193 lncRNA upstream 50451 36364072 ~ 36364287 (+) True G137433
TU158046 lncRNA upstream 114667 36298120 ~ 36300071 (+) True G137298
TU158028 lncRNA upstream 143556 36270937 ~ 36271182 (+) True G137280
TU158316 lncRNA downstream 78499 36493740 ~ 36503970 (+) True G137550
TU158317 lncRNA downstream 80456 36495697 ~ 36498945 (+) True G137551
TU158427 lncRNA downstream 272541 36687782 ~ 36688029 (+) True G137657
TU158442 lncRNA downstream 296899 36712140 ~ 36715041 (+) True LOC110488878
TU158410 lncRNA downstream 329839 36745080 ~ 36747246 (+) True LOC110533757
XM_036947374.1 mRNA upstream 9428 36354883 ~ 36405310 (+) False LOC110488849
XM_036933854.1 mRNA upstream 136152 36275741 ~ 36278586 (+) True LOC118936744
XR_002468485.2 mRNA upstream 181576 36229515 ~ 36233162 (+) False LOC101268898
XM_036947352.1 mRNA upstream 186969 36217121 ~ 36227769 (+) False LOC110488805
XM_036947400.1 mRNA downstream 5510 36420751 ~ 36656060 (+) False LOC110488866
XM_036947408.1 mRNA downstream 5512 36420753 ~ 36656060 (+) True LOC110488866
XR_002468497.2 mRNA downstream 296843 36712084 ~ 36715233 (+) False LOC110488878
XR_005036565.1 mRNA downstream 296843 36712084 ~ 36715233 (+) False LOC110488878
XM_021561331.2 mRNA downstream 305907 36721148 ~ 36732138 (+) True LOC110488885
TU158176 other upstream 12767 36395286 ~ 36401971 (+) True LOC110488849
TU158178 other upstream 28882 36381892 ~ 36385856 (+) False LOC110488849
TU157787 other upstream 314461 36099611 ~ 36100277 (+) True G137058
TU157722 other upstream 376997 35982832 ~ 36037741 (+) True G136994
TU157485 other upstream 558338 35855149 ~ 35856400 (+) False LOC100653444
TU159857 other downstream 1361820 37777061 ~ 37824010 (+) False G139004
TU159860 other downstream 1361820 37777061 ~ 37824010 (+) False G139004
TU159861 other downstream 1361820 37777061 ~ 37824010 (+) False G139004
TU159862 other downstream 1361820 37777061 ~ 37824010 (+) False G139004
TU159863 other downstream 1361820 37777061 ~ 37824010 (+) True G139004

Expression Profile