RNA id: TU158427


Basic Information

Item Value
RNA id TU158427
length 218
lncRNA type inter_gene
GC content 0.43
exon number 2
gene id G137657
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 36687782 ~ 36688029 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

taggaaggtgttcctaatgttttgtacacgcaGCGATTTGACTAGAAAGTTTTAATGCAACTTTCAGGTTACTGAAGGTCTTTTCAAGTAtaccgatctctctctctctctctctgtctttctctttttctctctccccttgtcaGGCTCTTCTAAGAGTGTCCTACACTACCTGGAGCCCAGCTCTCATTGATCAAAGTGGAAGTAGAATATCAGGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU158316 lncRNA upstream 183812 36493740 ~ 36503970 (+) True G137550
TU158317 lncRNA upstream 188837 36495697 ~ 36498945 (+) True G137551
TU158175 lncRNA upstream 272541 36414738 ~ 36415241 (+) True G137415
TU158207 lncRNA upstream 295894 36391123 ~ 36391888 (+) True G137447
TU158206 lncRNA upstream 297976 36389527 ~ 36389806 (+) True G137446
TU158442 lncRNA downstream 24111 36712140 ~ 36715041 (+) True LOC110488878
TU158410 lncRNA downstream 57051 36745080 ~ 36747246 (+) True LOC110533757
TU158475 lncRNA downstream 85121 36773150 ~ 36773510 (+) True G137702
TU158484 lncRNA downstream 98328 36786357 ~ 36786558 (+) True G137711
TU158485 lncRNA downstream 98697 36786726 ~ 36787107 (+) True G137712
XM_036947400.1 mRNA upstream 31722 36420751 ~ 36656060 (+) False LOC110488866
XM_036947408.1 mRNA upstream 31722 36420753 ~ 36656060 (+) True LOC110488866
XM_036947374.1 mRNA upstream 282472 36354883 ~ 36405310 (+) False LOC110488849
XM_036933854.1 mRNA upstream 409196 36275741 ~ 36278586 (+) True LOC118936744
XR_002468485.2 mRNA upstream 454620 36229515 ~ 36233162 (+) False LOC101268898
XR_002468497.2 mRNA downstream 24055 36712084 ~ 36715233 (+) False LOC110488878
XR_005036565.1 mRNA downstream 24055 36712084 ~ 36715233 (+) False LOC110488878
XM_021561331.2 mRNA downstream 33119 36721148 ~ 36732138 (+) True LOC110488885
XR_005036567.1 mRNA downstream 57052 36745081 ~ 36747247 (+) False LOC110533757
XR_005036570.1 mRNA downstream 89989 36778018 ~ 36780665 (+) True LOC118939566
TU158176 other upstream 285811 36395286 ~ 36401971 (+) True LOC110488849
TU158178 other upstream 301926 36381892 ~ 36385856 (+) False LOC110488849
TU157787 other upstream 587505 36099611 ~ 36100277 (+) True G137058
TU157722 other upstream 650041 35982832 ~ 36037741 (+) True G136994
TU157486 other upstream 831382 35855228 ~ 35856400 (+) False LOC100653444
TU159857 other downstream 1089032 37777061 ~ 37824010 (+) False G139004
TU159860 other downstream 1089032 37777061 ~ 37824010 (+) False G139004
TU159861 other downstream 1089032 37777061 ~ 37824010 (+) False G139004
TU159862 other downstream 1089032 37777061 ~ 37824010 (+) False G139004
TU159863 other downstream 1089032 37777061 ~ 37824010 (+) True G139004

Expression Profile