RNA id: TU158484


Basic Information

Item Value
RNA id TU158484
length 202
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G137711
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 36786357 ~ 36786558 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ggtctttgtcatGTTGGAAAgtcaaccttcgccccagtctgaggtcctgaatggtctggagcaggtttttatcaaggatctctctgtacttttctccgttcatctttgtctcgatcctgactagtttcccagtccctgccactgaaaaacatccccacagcatgatgctgccaccaccatgcttcaccgtagggatggttcc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU158475 lncRNA upstream 12847 36773150 ~ 36773510 (+) True G137702
TU158410 lncRNA upstream 39111 36745080 ~ 36747246 (+) True LOC110533757
TU158442 lncRNA upstream 71316 36712140 ~ 36715041 (+) True LOC110488878
TU158427 lncRNA upstream 98328 36687782 ~ 36688029 (+) True G137657
TU158316 lncRNA upstream 282387 36493740 ~ 36503970 (+) True G137550
TU158485 lncRNA downstream 168 36786726 ~ 36787107 (+) True G137712
TU158546 lncRNA downstream 117357 36903915 ~ 36904132 (+) True G137770
TU158548 lncRNA downstream 118907 36905465 ~ 36905799 (+) True G137772
TU158553 lncRNA downstream 162418 36948976 ~ 36949256 (+) True G137775
TU158556 lncRNA downstream 166344 36952902 ~ 36953127 (+) True G137778
XR_005036570.1 mRNA upstream 5692 36778018 ~ 36780665 (+) True LOC118939566
XR_005036567.1 mRNA upstream 39110 36745081 ~ 36747247 (+) False LOC110533757
XM_021561331.2 mRNA upstream 54219 36721148 ~ 36732138 (+) True LOC110488885
XR_002468497.2 mRNA upstream 71124 36712084 ~ 36715233 (+) False LOC110488878
XR_005036565.1 mRNA upstream 71124 36712084 ~ 36715233 (+) False LOC110488878
XM_036947474.1 mRNA downstream 27212 36813770 ~ 36821500 (+) False LOC110534928
XM_036947458.1 mRNA downstream 27352 36813910 ~ 36825079 (+) False LOC110534928
XM_036947468.1 mRNA downstream 27352 36813910 ~ 36825082 (+) False LOC110534928
XM_036947454.1 mRNA downstream 27358 36813916 ~ 36825081 (+) False LOC110534928
XM_036947451.1 mRNA downstream 27847 36814405 ~ 36825082 (+) False LOC110534928
TU158176 other upstream 384386 36395286 ~ 36401971 (+) True LOC110488849
TU158178 other upstream 400501 36381892 ~ 36385856 (+) False LOC110488849
TU157787 other upstream 686080 36099611 ~ 36100277 (+) True G137058
TU157722 other upstream 748616 35982832 ~ 36037741 (+) True G136994
TU157486 other upstream 929957 35855228 ~ 35856400 (+) False LOC100653444
TU159857 other downstream 990503 37777061 ~ 37824010 (+) False G139004
TU159860 other downstream 990503 37777061 ~ 37824010 (+) False G139004
TU159861 other downstream 990503 37777061 ~ 37824010 (+) False G139004
TU159862 other downstream 990503 37777061 ~ 37824010 (+) False G139004
TU159863 other downstream 990503 37777061 ~ 37824010 (+) True G139004

Expression Profile