RNA id: TU158870


Basic Information

Item Value
RNA id TU158870
length 865
lncRNA type antisense_over
GC content 0.57
exon number 3
gene id G138080
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 36825792 ~ 36828397 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACGTTTTATGTCAAGCAAGTTTATTTAAATAGCCAAGGACTGCCCCTCTGCCTGCTACCATTCCAGGTTCACAACTTTTTGCTCCTCCTGATGAGTGACGTAGAGTCCACTGTCAGCGTCTCAACCATCTCTCCTCCCTTGAGCTCCTGGACGCTGGAGAATTTATCTGTGTTGCACATCAGCTTTCCTCCCTCCAGTCTGACAGTGCACTGAGCTTTTTGCCATCCATGGTGGTGATGTCGGCCTCTTTGCCGATGGTGAAGGAGTTGGTGACGGACTTGCCAGGAGTTTTGGAGGTGATGACAAAGTCATTGCCGTTCTGCTGGATCTCAGTGATGGGCTTGATGTCTTTGGCCAGCTTGATCACATCTTCTGGGAGGGCTGATAGACGGGCAGGAGGATGACTCATTAGCTTACCTTTTCATTTTGGGTCATAGTTGGGAATCTATAGTTCAGTCTCttgtatttccttgattccttacgtcctctctccttctcaaaactcattggatgagaaggtcagaggggaggaacCATTCATCTTCTCTCCTCCAATGAGTTTTGAGAAAGAGGACACAAGGAATCAAGCAAATACATTTCAGATTTACCCCTAAACAACCCTATACATGCAATGCAATGGATCTTTAGGAAACTCACAGATGGCCCTGAGAAACTCCTCGTAGTTCTCCTGCGCATACACTTGCCACGTTCCACTGAAGGCCATTTTGTCTGTGTCTGTACCGGTCCGGTTTCTTCTCCTTCACCAAGATGGGCAATAAGAGCCTGAGACAGCTGTGCAAAGCTCAACACAAATGTAGAGATGGCACTGCGTCCCCCACAGCTACTTATATCAGCAGGTAGAGGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU158890 lncRNA downstream 35269 36790286 ~ 36790523 (-) True G138099
TU158887 lncRNA downstream 40891 36784597 ~ 36784901 (-) True G138096
TU158863 lncRNA downstream 66381 36759199 ~ 36759411 (-) True G138078
TU158859 lncRNA downstream 69753 36755824 ~ 36756039 (-) True G138074
TU158671 lncRNA downstream 319885 36494077 ~ 36505907 (-) True G137889
TU158937 lncRNA upstream 42951 36870035 ~ 36874281 (-) True G138145
TU158940 lncRNA upstream 70808 36897892 ~ 36899091 (-) True G138146
TU158962 lncRNA upstream 90503 36917587 ~ 36918192 (-) True G138167
TU158947 lncRNA upstream 95087 36922171 ~ 36925845 (-) True LOC110488943
TU158948 lncRNA upstream 116181 36943265 ~ 36946080 (-) True G138153
XR_005036564.1 mRNA downstream 284594 36487954 ~ 36541198 (-) True LOC118939565
XM_036947382.1 mRNA downstream 470002 36299063 ~ 36355790 (-) True LOC110488840
XM_036947385.1 mRNA downstream 502465 36299063 ~ 36323327 (-) False LOC110488840
XM_036947395.1 mRNA downstream 502560 36299063 ~ 36323232 (-) False LOC110488840
XM_021561266.2 mRNA downstream 507600 36299063 ~ 36318192 (-) False LOC110488840
XM_021561369.2 mRNA upstream 17845 36844929 ~ 36849373 (-) False pnrc2
XM_021561436.2 mRNA upstream 95018 36922102 ~ 36925882 (-) False LOC110488943
XR_002475036.2 mRNA upstream 437092 37264176 ~ 37272975 (-) True LOC110533765
XM_021561473.2 mRNA upstream 505563 37332647 ~ 37337607 (-) True LOC110488968
XM_036947585.1 mRNA upstream 615275 37442359 ~ 37463839 (-) False LOC110501508
TU158620 other downstream 186787 36634193 ~ 36639005 (-) True G137839
TU158240 other downstream 455464 36370004 ~ 36370328 (-) True G137479
TU157404 other downstream 1150087 35674431 ~ 35675705 (-) False drd2l
TU157405 other downstream 1150165 35674298 ~ 35675627 (-) False drd2l
TU157060 other downstream 1518063 35306367 ~ 35307729 (-) True G136399
TU158919 other upstream 17849 36844933 ~ 36849345 (-) True pnrc2
TU159561 other upstream 633790 37460874 ~ 37463758 (-) True LOC110501508
TU160127 other upstream 920357 37747441 ~ 37752958 (-) True G139231
TU160230 other upstream 1219618 38046702 ~ 38048608 (-) False LOC110489105
TU160231 other upstream 1219618 38046702 ~ 38048347 (-) False LOC110489105

Expression Profile