RNA id: TU158940


Basic Information

Item Value
RNA id TU158940
length 528
lncRNA type antisense_over
GC content 0.42
exon number 3
gene id G138146
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 36897892 ~ 36899091 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCACAGAAATTTTATTTTCAAAAGAATTCCACATCCTCAGGTAAAGAGTTGGAAAAGAAAAAAAACCTGGTTGGATGAGGCCAGGGGGCTTTAGTAATACAGCTTCTGCAGAGGGGGCAGTGCTGGCAGGTTATAATACAGAAGGATCAGAAAAGCCACTACAGCACTGGGGAGAACGACAGAGCTGCTTTCGTCAAAAATCCAGGGCAATAGCATATCTCGAATCATTACACTTTCTTCTGATTCAATAGCGTTTTGGCCAGCAGACAGTttgacaaaaaataaaataaaaatggataAACCATGGCACCCAAAaagcattaaaaaaaacacaaatctaGTTGAGGAAGGGGCAGTAGAAGAGCAGCCATCTTGTGAGAAAAGCTGGTACGTCGATGGGGAATTCAAGAGACATAACTAGCAGGCCTTGCGCCGTATCTTCGCATGATCTGGTCTTGTGTGAATTTCACAAAAGATTCGTATTGTTCTGCAAGTTTTGTGTTGAGGATCTGTTCATACTCCTCCCGG

Function

GO: NA

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU158892 lncRNA downstream 16278 36792396 ~ 36881614 (-) True G138100
TU158937 lncRNA downstream 23611 36870035 ~ 36874281 (-) True G138145
TU158871 lncRNA downstream 69495 36825792 ~ 36828397 (-) False G138080
TU158867 lncRNA downstream 69495 36825866 ~ 36828397 (-) True G138080
TU158870 lncRNA downstream 70808 36825792 ~ 36827084 (-) False G138080
TU158962 lncRNA upstream 18496 36917587 ~ 36918192 (-) True G138167
TU158947 lncRNA upstream 23080 36922171 ~ 36925845 (-) True LOC110488943
TU158948 lncRNA upstream 44174 36943265 ~ 36946080 (-) True G138153
TU158976 lncRNA upstream 66209 36965300 ~ 36965528 (-) True G138181
TU158983 lncRNA upstream 74752 36973843 ~ 36974112 (-) True G138188
XM_021561369.2 mRNA downstream 48519 36844929 ~ 36849373 (-) False pnrc2
XR_005036564.1 mRNA downstream 356694 36487954 ~ 36541198 (-) True LOC118939565
XM_036947382.1 mRNA downstream 542102 36299063 ~ 36355790 (-) True LOC110488840
XM_036947385.1 mRNA downstream 574565 36299063 ~ 36323327 (-) False LOC110488840
XM_036947395.1 mRNA downstream 574660 36299063 ~ 36323232 (-) False LOC110488840
XM_021561436.2 mRNA upstream 23011 36922102 ~ 36925882 (-) False LOC110488943
XR_002475036.2 mRNA upstream 365085 37264176 ~ 37272975 (-) True LOC110533765
XM_021561473.2 mRNA upstream 433556 37332647 ~ 37337607 (-) True LOC110488968
XM_036947585.1 mRNA upstream 543268 37442359 ~ 37463839 (-) False LOC110501508
XR_005036591.1 mRNA upstream 564894 37463985 ~ 37476762 (-) False LOC118939571
TU158919 other downstream 48547 36844933 ~ 36849345 (-) True pnrc2
TU158866 other downstream 69495 36825866 ~ 36828397 (-) False G138080
TU158620 other downstream 258887 36634193 ~ 36639005 (-) True G137839
TU158240 other downstream 527564 36370004 ~ 36370328 (-) True G137479
TU157404 other downstream 1222187 35674431 ~ 35675705 (-) False drd2l
TU159561 other upstream 561783 37460874 ~ 37463758 (-) True LOC110501508
TU160127 other upstream 848350 37747441 ~ 37752958 (-) True G139231
TU160230 other upstream 1147611 38046702 ~ 38048608 (-) False LOC110489105
TU160231 other upstream 1147611 38046702 ~ 38048347 (-) False LOC110489105
TU160233 other upstream 1147611 38046702 ~ 38048666 (-) False LOC110489105

Expression Profile