RNA id: TU159474



Basic Information


Item Value
RNA id TU159474
length 252
lncRNA type inter_gene
GC content 0.48
exon number 1
gene id G138661
representative True

Chromosome Information


Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 37332047 ~ 37332298 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


tggtttgatgaacaCACAAACTATGTAACCCATATGCCATGGCTGCCTCAGTCACCCGTTCTCAACCCAATTGGAACACCTTATGGGAGATTCAGGAGCGGTGCCTGAGACGGCgctttccaccaccatcaacgaAGCACAAAATTATAGAAATTCTTGTTGAAGAGTGGTGTcgtatccctccaatagagttccagacacttgtagaatctatgccaaggtgcatggAAGCTGTTATGGCTCGTgatggcc

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU159472 lncRNA downstream 479 37331037 ~ 37331568 (-) True G138659
TU159464 lncRNA downstream 16728 37315067 ~ 37315319 (-) True G138651
TU159459 lncRNA downstream 25259 37306567 ~ 37306788 (-) True G138646
TU159294 lncRNA downstream 45566 37286240 ~ 37286481 (-) True G138484
TU159275 lncRNA downstream 54028 37274620 ~ 37278019 (-) False G138472
TU159531 lncRNA upstream 78929 37411227 ~ 37412085 (-) True G138713
TU159560 lncRNA upstream 131688 37463986 ~ 37476683 (-) True LOC118939571
TU159578 lncRNA upstream 132288 37464586 ~ 37465893 (-) True G138760
TU159599 lncRNA upstream 165114 37497412 ~ 37497701 (-) True G138780
TU159602 lncRNA upstream 168619 37500917 ~ 37501223 (-) True G138783
XR_002475036.2 mRNA downstream 59072 37264176 ~ 37272975 (-) True LOC110533765
XM_021561436.2 mRNA downstream 406165 36922102 ~ 36925882 (-) False LOC110488943
XM_021561369.2 mRNA downstream 482674 36844929 ~ 36849373 (-) False pnrc2
XR_005036564.1 mRNA downstream 790849 36487954 ~ 36541198 (-) True LOC118939565
XM_036947382.1 mRNA downstream 976257 36299063 ~ 36355790 (-) True LOC110488840
XM_021561473.2 mRNA upstream 349 37332647 ~ 37337607 (-) True LOC110488968
XM_036947585.1 mRNA upstream 110061 37442359 ~ 37463839 (-) False LOC110501508
XR_005036591.1 mRNA upstream 131687 37463985 ~ 37476762 (-) False LOC118939571
XR_005036592.1 mRNA upstream 131687 37463985 ~ 37476762 (-) False LOC118939571
XM_021561545.2 mRNA upstream 445106 37777404 ~ 37782182 (-) True LOC110489008
TU158919 other downstream 482702 36844933 ~ 36849345 (-) True pnrc2
TU158866 other downstream 503650 36825866 ~ 36828397 (-) False G138080
TU158620 other downstream 693042 36634193 ~ 36639005 (-) True G137839
TU158240 other downstream 961719 36370004 ~ 36370328 (-) True G137479
TU157404 other downstream 1656342 35674431 ~ 35675705 (-) False drd2l
TU159561 other upstream 128576 37460874 ~ 37463758 (-) True LOC110501508
TU160127 other upstream 415143 37747441 ~ 37752958 (-) True G139231
TU160230 other upstream 714404 38046702 ~ 38048608 (-) False LOC110489105
TU160231 other upstream 714404 38046702 ~ 38048347 (-) False LOC110489105
TU160233 other upstream 714404 38046702 ~ 38048666 (-) False LOC110489105

Expression Profile