RNA id: TU159908


Basic Information

Item Value
RNA id TU159908
length 380
lncRNA type inter_gene
GC content 0.45
exon number 2
gene id G139038
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 37772990 ~ 37773504 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

aGCAAAACCATTCAAGGTGATGAGGATGCAATGTGAAGACTTCAGGCACCTCCCAGATTCTGTCCTCAAGCGACCAGCTGGACTACAGATCACCTCAGTGAGGTGGTTAAAAGTCACAGTTGAGGATCCTTGGAATCTGTACGCCAAACAGAGCCAGTCTATTTGAGGGATGGAAGTCGTGGCTGATCTCCAAACCAAAAGGAGGAGCTACACCTCAACCTCCCTATTTTGCAAGCCACTACCCTAGAGCACATGAGAGTCCTCTGCCCATCAAAAAAAACAAGTACCAAGATCTGATGACCATGCTCAACGACTTGCCAGCTGCTGCACGCTCTTTTTATGAATCACTGCAGAGTGAATAATTTGTTGTTAAACCAAGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU159831 lncRNA upstream 79809 37692982 ~ 37693181 (+) True G138991
TU159626 lncRNA upstream 182433 37535056 ~ 37590557 (+) True G138805
TU159453 lncRNA upstream 240877 37531419 ~ 37532113 (+) True G138640
TU159444 lncRNA upstream 254136 37518494 ~ 37518854 (+) True G138631
TU159443 lncRNA upstream 260245 37512539 ~ 37512745 (+) True G138630
TU159910 lncRNA downstream 3087 37776591 ~ 37776949 (+) True G139040
TU159990 lncRNA downstream 171398 37944902 ~ 37945164 (+) True G139102
TU159991 lncRNA downstream 171840 37945344 ~ 37945605 (+) True G139103
TU160029 lncRNA downstream 229562 38003066 ~ 38007585 (+) True G139139
TU160059 lncRNA downstream 262971 38036475 ~ 38036812 (+) True G139167
XM_036947634.1 mRNA upstream 9275 37699215 ~ 37763715 (+) False LOC110501519
XM_036947642.1 mRNA upstream 9275 37699215 ~ 37763715 (+) False LOC110501519
XM_036947647.1 mRNA upstream 9275 37699215 ~ 37763715 (+) False LOC110501519
XM_036947657.1 mRNA upstream 9275 37699215 ~ 37763715 (+) False LOC110501519
XM_036947663.1 mRNA upstream 9275 37699215 ~ 37763715 (+) False LOC110501519
XM_021561609.2 mRNA downstream 89697 37863201 ~ 37888589 (+) False LOC110489035
XM_021561587.2 mRNA downstream 89699 37863203 ~ 37890510 (+) False LOC110489035
XM_021561592.2 mRNA downstream 89700 37863204 ~ 37890510 (+) False LOC110489035
XM_021561600.2 mRNA downstream 105148 37878652 ~ 37890510 (+) True LOC110489035
XM_021561628.2 mRNA downstream 118447 37891951 ~ 37911330 (+) False sh3d21
TU158176 other upstream 1371019 36395286 ~ 36401971 (+) True LOC110488849
TU158178 other upstream 1387134 36381892 ~ 36385856 (+) False LOC110488849
TU157787 other upstream 1672713 36099611 ~ 36100277 (+) True G137058
TU157722 other upstream 1735249 35982832 ~ 36037741 (+) True G136994
TU157486 other upstream 1916590 35855228 ~ 35856400 (+) False LOC100653444
TU159857 other downstream 3557 37777061 ~ 37824010 (+) False G139004
TU159860 other downstream 3557 37777061 ~ 37824010 (+) False G139004
TU159861 other downstream 3557 37777061 ~ 37824010 (+) False G139004
TU159862 other downstream 3557 37777061 ~ 37824010 (+) False G139004
TU159863 other downstream 3557 37777061 ~ 37824010 (+) True G139004

Expression Profile