RNA id: TU159863


Basic Information

Item Value
RNA id TU159863
length 9846
RNA type TUCP
GC content 0.49
exon number 3
gene id G139004
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 37777061 ~ 37824010 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CGTTTTTTTCATGCTTTATTTCATGCTATTACAGCAGGCAGGGTCATTTTAGTGCAAAAATAAAGCCATGGAAATGTGACTATGTCATTGTAATCAATGACGATATACACTTAAATGTATAAGTGTGCCATTTGCAGTCGTTATCATCATATTTTAACtttaaagatatatattttttgttatacACGGTGTACATCATTTACTGGTCAATTTCTAACAGAATATATTCCAAGTGGGCGAACTCATCTCTATTCACTCTATAGGTTACAATGAGTTATGACAGGGCATGCAACCTGGATTGCAATGTtacaaaaatgtacatttaacAAAGCAAGAAGAGAAACTAAACTGGGCAGCCGAAGGTTGTGATCTGGTTGATGAACTCATCAATGCCCAGACAGACTTCTCTGTAGTTTCTGGATGTGCACTCTTGTTGTGAGGGCCAGTACTCTTTCCATGTCTGTTCTCCTAGGACACCACCGTAGTGCTGCGGTTGACATCTGGCTCATCTTTCTTCTGCATACTGCAGCTTTCTTCCGCACACGTGCACACATCTCCAAGAGACAGTCTGCTCAGAGTACCGCCTTCCCTCTGTGGGTGGTAGAACTTCACACAGTTCTTCTGGTTGTAGTATTCATATACAGAGACGGCAGCTGGCTGAAGAACTCCCACTTCCTGTACTCTGTGGATCTTAAAGGATATTTTCTCTTCTAACTTATGAGACACCTTGTTCAGATATAGGATGAGAGATCCTCTTTCAGACAGAACTTTGGACATCTCAAACTTCTCTATGTAGCGCTCCCTCCCCTTGGACAACTGATTCAGATCGTCTGTGTCCACAATGAAGCCGGTCAGCAAGCTGATGTCCAGAATAGACATGGTCGCATCTCTCTCTGAGTTACGGTACAACACCTCAATATTGAGCATAAATGACTCCTTGGCGTCCTCGTGACTTGTTTTGTCCATCTTAGTGAGGGTGACAGAGAGGTCAAAGCTTTCACAGTCACTGTCCTTTTCCTCTGGCAGGGCATAGTACAGTGTCACCACCGACAAGGTCGCCTCACCATTTCCTGAGGCTTTTACAGTCAAGTCCTTGTCTATGGAGTTGACCTTGTCTGTACGAGTGTGGAACTGGTTCTTGTTGTTGATGGACCACTTGGTGACTGATGCCCTGCCGGCCACCTCTAGGTTGATGTTCAAGTGAAAGTCTTTCAGGTCCTTCACGTGGCTCCAATACTCAGCCACAGCCTGGAACACCATGATGGTGGACTGTGTGGATCCGTATCCCCCTCCCACCTTCTTCTGCTTGTTGAGCCACCTGACTATGGGGCCGGCCTCTTCGAAGGCCTTCACCTTGACCAGGGCAAGCAGGGCGTACGACGTGGCCTCCAGCGTGTACTGGTGAACACCAGGGACTGGCCAGTGGTCCAGCTGTGGAGAGGCGAACTTCAATAGGGTCTCCTTGTTTAGTTTCCCTGCATTGGCCAGAGCATAGGAGGTCATAGCTACAGCATATGGGTTCGTCAGGTGGGGCAGACGCTTCTCGAGGTACGCTACTGCTTTAGCCATACTGTCTTGTAGGCTGTTGACATACTGCTCACACAGTGAGTGTGCTTCCTGCATGGCGATGAGAACAAAAGCTGTCATGGAGGCGTCATTGTCCGATCCCATCATGTTACTCATTATCTCTGCGTGAACGACAGGAGCAAACTCATTGAAGATGCCATCTGGCTGTTGTGTGCTCAGGATCAGCCACTTGACAGCAGTACAGAGCACATTTTCCTGAACACTGATTAATGTACTGGACATGGCAAACACCTTCACCACGTATGCTGTCAGCCAGGTGCTGCTCTGTCTGCTGACCCAGGCAGCGTAGGAGCCATCTTCTTTACGGTAGGCCAGCTCACGTTGGTAACCAATGTTGATATACTTGATGGCTGTGTTCCGTCTGTCCAGGCCAATATCCTCCCACTTTTTGGTGTTGTCTAGGTAGTGTGTAGCAATGACAGGCAGGGTCATGTAGATCATGTTCTGTTCCCCAGATCCGACTGGCTGAACTATCAGACTGCCCAGAGAGTCTCCACTGATGGCCTGCTCCACCAGCACACTGGTCTGCTCTCCACCAGTCAGACTGATCAGTGTGTAAGCATCAGAGTTTGGCACCTGGTTCCGGGGAACTTCACTGGGTATGTGTGACGTCTGCTCACCACCATGTTTAGCCGGGTTCAGGAGTACGTTGGTTTCCTTCTTGACCAGTACTCCCTCAGCCACAACACGCAGATCCCTCTTCACCTCGTCATTGCTGTCAGAGTTTTTCACAGATGCCTTGACCTCAATGGAGTACATGCCCAGTTTCATAGGGATGATGACATAGGGGACAACCCGGGTGGACATGGCGTCCATGTTCACTTCCTGCCTGTACTTACCCTTCTTGCTTGCCGAGCTGCACACCTCGTCATTCTCCATCAGctccacacacacagtgatgggGTCTTCGCTGTTGTTGTGGAGGATTGCTTTGACCTCCAGCTGTTCATTGCGGACGGCTGAGTAGGGTAGCTTGAGGTCGATGAAGAACTTCTTTAGAACTATCATCTCAAACGAATCTGCCACACAGATACCATGAGTTTTAGACAGGCTAATGGCTGTTATTTGCCAGGTGGTGATGGAATCCTTTCGGAAGATGTTCCTTATTACAGATGTGGACTCGCAGTTCTTGTCTTGGGCAGGGCATTCAGGAAGATTGATCTCCTCCCACATCCAGCTCTGAGGGATCTGACAACGAGACACAATGTCTTCAGACCGCATGTAcgcatcatcatcatcctcctcactGCGTGAGAGCAGCAGTGCATCCTGTTTGGATTCTATCTTCTTGGAGGCCATCTCAGTGCAACAGACAAGGAAGGCTTGGACGCAGACGTCTTTatctgtgatgtactgggcccgtCTGTCACAGGTATATCCCATGGTGTTGTCCCTCATCCCGTCCACACAACACTCCTTGGCCAGACCATTGTACTTACTGGCCATACTAGTGATGATGTCACTGATGGTCACTGCTCGTCTCCGCCTAGAACTAACAGGACAGCTGGGGTCTGTTCTGATCCCAGTCCCTTTAGCAGTGTTGGTCTCAAATACCAGACCAGCATCGTAGAACACCCCCATATTGTCTGCTCCCCCTCCAGCTGTACAGCCTGTATCATGCTTCTCTATGGTGTCCCAGATCTTGGTCTGTGTGAGACGGTGTTTGCTGTTGAGAACGTAGACTCCCTTGTCTACAGCCACCAGTCCTACTTTAGCTCCCGGGTCTCCAGTGATGGTTAGACTGAAAGCCTTATGAGGCTCATAGGATGCCTTGGGCCTGGTCGATGTGACTTTCAGTGAGCCGATGCAGGAGACCTTGATGTCAACCCAGACAGAGTCTGCCACCAGGTCAGCTGCTCCCACATGGTAGTACGCTACGATGCGGAACGACGGAAGCAGCTCCTTGGAGACAGGcactgacagtgttaccagcGCGTTGCCCTGTCTTTTAAATCGGCCCACTTTCACCAGCTGACCTCTACTCAGGAACATGTATGTAATGTCATGGATTTGTATGGGGGTGGATCCCAGGTTCAGTTCGATCTTAATGGGTTCTCCTATCTTCAGCTCATTAGAGTCAACCCCGACATGGAGAAAGTTGCTGGTGGAAGTTCTGTAGGGGAGAGCCTTCATGGTGGCCTCCGCCTGTCTGTTGTGGAGGATCGCCGGGTCCTTGGTCTTCACAGTGATTGCCAGCTCTCTGGCAGATGCCACAGTGTTAATTGTAACTTTGGCAAAACCATTGGCCCTGGTCACCCCTTTAGCATTATCTGGAGTCACCTCAACCTCCACTCCAATGGCTGGAGAGTTGTCGGGATTTGTAATGTAAACAGAGACGTCAAAGGGCATGCCAGGTTTGAAGTATTTGGGCGTTCTCTTGAAGAGGATGGTGTATGGCGAAGTGACAATCtggatGGGTCATTTTAGTGCTAAAATAAAGCCATAGAAATGTGACCATGTCATTGTAATCAATGACAACTGCAAATGGTAAACTTAAATGTATAAATGTGCCATTTgcagtcatcatcatcatgttaacTTTAAAGAAAAAATGATTTATGCACGGTGTACATCATTTACTGGTCAGTTTCTAACAGAATATATTCCAAGTGGGCAAACTCATCTCCATAATCTCTATAGGTTACAATGAGTTATGACAGGGCATGCAACCTGGATTGCAATGTtacaaaaatgtacatttaacAAAGCAAGAAGAGAAACTAAACTGGGCAGCCGAAGGTTGTGATCTGGTTGATGAACTCATCAATGCCCAGACAGACTTCTCTGTAGTCTCTGGATGTGCACTCTTGTTGTGAGGGCCAGTACTCAATCCATGTCTGTTCTCCAAGGACATACTTGTACTGCAACAGTCCTTTATCCTCCACTCTGTGCAGGTCTTCAGACTTCCCCATAATCATGTATGTTTTCCCCTGCATTAGACCCAGAGCTTCTCTACAGTAAGCCAGTCCCATGAAGTCACGATTCTTCCCCTCCACTCCCTCGTCAGTACCTGGCTTGATGACCAAATCGATCTTCACGGTGtaagtatctgtgtgtgtggtcAGCTTCGAGTCCACCACCGTGGCTTTGTAAACGTAATCCAGTCCCGCGCCGCAAGCTTTGTCAATGCGTTGGACATCTGGCTCACCTTTCTTCTGCATACTGCAGCTCTCTTCCGCACACGTGCACACGTCTCCAAGACACAGTCTGCTCAGAGTACCACCCTCCCTCTGTGGGTGGTAGAACTTCACACAGCGCTTCTGGTTGTAGTATTCATATACAGAGACGGCAGCTGGCTGAAGAACTCCCACTTCCTGTACTCTGTGGATCTTAAAGGATATTCTGTCTTCTAACTTATGAGACACCTTGTCCAGATATAGAATGAGAGATCCTCTTTCAGACAGAACTTTGTCCATCTCAAACTTCTCTATGTAGCGCTCCCTCCCCTTGGACAACTGATTCAGATCGTCTGTGTCCACAATGAAGCCGGTCAGCAAGCCGATGTCCAGAATAGACATGGTCGCATCTCTCTCTGAGTTCTTATACAACACCTCAATAGTCAGCATAAATGACTCCTTGGCGTCCTCGTGACTTGTTTTGTCCATCTTAGTGAGGGTGACAGAGAGGTCAAAGCTTTCACAGTCACTGTCCTTTTCCTCTGGCAGGGCATAGTACAGTGTCACCACCGACAAGGTCGCCTCACCATTTCCTGAGGCTTTTACAGTCAAGTCCTTGTCAATGGAGTTGACCTTGTCTGTACGAGTGTGGAACTGGTTCTTGTTGTTGATGGACCACTTGGTGACTGATGCCCTGCCGGCCACCTCTAGGTTGATGTTCAAGTCAAAGTCTTTCAGGTCCTTCACGTGGCTCCAATACTCAGCCACAGCCTGGAACACCATGATGGTGGACTGTGTGGATCCGTATCCCCCTCCCACCTTCTTCTGCTTGTTGAGCCACCTGACTATGGGGCCGGCCTCTTCGAAGGCCTTCACCTTGACCAGAGCAAGCAGGGCGTACGACGTGGCCTCCAGCGTGTACTGGTAACCACCAGGGACTGGCCAGTGGTCCAGCTGTGGAGAGGCGAACTTCAGTAGGGTCTCCTTGTTGAGTTTCCCTGCATTGGCCAGAGCATAGGAGGTCATAGCTACAGCATAAGGGTTAGTCAGGTGGGGCAGACGCTTCTCGAGGTACGCTACTGCCTTAGCCATACTGCCTGGTAGGCTGTTGACAGACTGCTCACACACTGAGCTTGCTTCCTGCATGGCGATGAGAACAAAAGCTGTCATGGAGGCGTCATTGTCTGATCCCCTCACGTTACCCGTCATCTCTGCATGAATGACAGGAGCAAACTCATTGAAGATGCCATCTGGCTGTTGTGTGTTCAGGATCAGCCACTTGACAGCAGTACAGAGCACATTTTCCTGAACACTGATTAATGTACTGGACATGGCAAACACCTTCACCACGTATGCTGTCAGCCAGGTGCTGCTCTGTCTGCTGACCCAGGCAGCATAGGAGCCATCTTCTTTACGATAGGCCAGCTGACGTTGGTAACCAATGTTGATGTACTTGATGGCTGTGTTCCGTTTGTCCAGGCCAATATCCTCCCACTTTTTGGTGTTGTCCAAGTAGTGTGTAGCAATGACAGGCAGGGTCATGTAGATCATGTTCTGTTCCCCACACCCGACTGGCTGAACTATCAGACTGCCCAGAGAGTCTCCACTGATGGCCTGCTCCACCAGCACACTGGTCTGCTCTCCAGCTGTCACACTGATCAGTGTGTCAGCATCAGAGTTTGGCACCTGGTTTCGGGGCACTCCACTGGGTATGTGTGACGTCTGCTCACCACCATGTTTAACTGGGTTCAGGAGTACGTTGGTTTCCTTCTTGACCAGCACTCCCTCAGCCACAACACGCAGATCCCTCTTCACCCCGTCATTGCTGCCAGAGTTTTTCACAGATGCCTTGACCTCAATGGAGTGCAAGCCCAGCTTCATAGGGATGATGACATAGGGGACAACCCGGGTGGACATGGGGTCCATGTTCACTTCCTGCCTGTACTTACCCTTCTTGCTTGCCGAGCTGCACACCTCACCGTTCTCCATCAGCTCCACACGCACAATGATGGGGTCTTCGCTGTAGTTGTGGAGGATTGCTTTGACCTCCAGCTGTTCATTGCGGACGGCTGAGTAGGGCAGCTTGAGGTCGATGAAGAACTCCTTTAGAACTATCATCTCAAACGGATCTGCCACACAGATGCCATGAGTTTTAGACAGGCTGATGGCTGTTATTTGCCAGGTGGTGATGGAATCCTTTAAGAAGTTGTTCCTTATTACAGATGTGGACTCACAGTGCTTGTTTTGGGCAGGGCATTCAGGAAGATTGGTGTCCTCCCACATCCAGCTTTCAGGGAACTGACTACGAGACACAATGTCTTCAGACCGCATGTacgcatcatcatcatcatcctcctcactGCGTGAGAGCAGCAGTGCATCCTGTTTGGATTCTATCTTCTTGGAGGCCATCTCAGTGCAGCAGACAAGGAAGGCTTGGACACAGACGTCCCCATCTGAGATGTACTGGGCCCGTCTGTCACAGGTATATCCCATGGTGTTGTCCCTCATCCCGTCCACACAACACTCCTTGGCCAAACCATTGTACTTACTGGCCATACTAGTGATGACATCACTGATGGTCACTGCTCGTCTCCGCCTAGAACTAACAGGACAGCTGGGGTCTGTTCTGATCCCAGTCCCTTTAGCAGTGTTGGTCTCAAATACCAGACCAGCATCGTAGAACACCCCCATATTGTCTGCTCCCCCTCCAGCTGTACAGCCTGTATCATGCTTCTCTATGGTGTCCCAGATCTTGGTCTGTGTGAGACGGTGTTTGCTGTTCAGAACGTAGACTCCCTTGTCTACAGCCACCAGTCCTACTTTCGCTCCCGGGTCTCCAGTGATGGTCAGACTGAAAGCCCTACGAGGCTCATAGGATGCCTTGGGCCTGGTGGATGTCACTTTCAGTGATCCCATGCAGGATACCTTGATGTCAACCCAGACAGAGTCTGCCACCAGGTCAGCTGCTCCCACATGGTAGTACGCTACGATGCGGAACGACGGAAGCAGCTCCTTGGAGACAGGcactgacagtgttaccagcGCGTTGCCCTGTCTTTTAAATCGGCCCACTTTCACCAGCTGACCTCTACTCAGGAACATGTATGTAAGGTCATGGTTTTGTATGGTGGTGGGTCCCAGGTTCAGATCAATCTTAATGGGGTCTCCTATCTTCAGCTCATTAGAGTCAACCCCGACATGGAGAAAGTTCTTGGTGGAAGTTCTGTAGGGGAGAGCCTTCATGGTGGCCTCCGCCTGTCTGTTGCCGAGGATCGCCGGGTCCTTGGTCTTCACTGTGATTACCAGCTCTGTGGCTGATGCCACAGTGTTAAGTGGTATTTTTGCAAAACCGTTGGCCCTGGTCACCCCTTTAGCATGATCTGGAGTCACCTCAACCTCCACTCCAATGGCTGGAGAGTTGTCAGGATTTGTAATGTAAACAGAGACGTCAAAGGGCATGCCAGGTTTGAAGTATTTGGGCGTTCTCTTGAAGAGGATGGTGTATGGCGAAGTGACAATCtggatccctctcttctctgcctcTACCATTTCACCCCCACCCTCTGTTAACACGCTGACTGATACGAAGATGGACTGTTTGACCAGATCATGGATTTTGGGGAAAGTCTGTGTGATGTGTTCCTTTTTCAGACAAGCCACTCCTTTACCGTCTTTGATCTCTACTCTCTGCAAAGAGGCAGGGAAACtctttttctcgctctctgttGTGATGACACCAAACACCACATAGCCTGTCCCTGTCACTTCCTTACCGTATAGATACCTGGCAGTGATGTCAACAGTCAGGTCATTGTCGTCGACGTAAAAGAAGGCTTTAGCTGGGGTCAGACTAACCTCGAAGCTGGGCAGAACATACTCCTTGACCTCAAATTCAGATGAGAAGGTCTTTTGAGGTGTGCTCTGGAACCTTGTGACTACATGCCATGTCCCGAAACTGACGATGTCAGGGAGTTTGAACTGTCCAGATTTGACTCCCTTGTCTGGGTTGACGATCTCCCTGAAGATGGTGATGTTTTCAGGAGTCATGATCTCCACAGAAACGGCGATCTCTTTGTTCTTGGCGACCTCCTGGTCCTCAAATATCTCCCTGGTCAGAGGCTCCAGGCCAGGAGTCATAGAGAACACTCTGTAGTGGACGGTGCTGGCCGGAGTGTAAATGGTCTTGTCAGTCTGGATGAAGATGTATCCAGACTGGAAGGAGACCAGGACAACCTTCTCCAGGAGGCGGTCAGGGAACTGGGCCTGCAGGACCACATACTGCTTCTGCTTGGGGTCATCCACAAAGTGGTCCCCCTCTGGGATGACCAGTTGTGTCATAGCCTGGAAGTTGTTTGCTTGATCCAGAACCACTGATTTAGAGGCTAGCTCTTTGCTCTGTGTAGGGTGGTTCTTCACCATGATCTTAACATTCAGGGGACCTCCTACATGGTCCTGAGATTCCACAAAGATGTTCTCATTACTGCCCacacgcagcaggttaggagctGACAACACTTGTAGTGCAGCTCCATCAGATAAGGTAGGTAAGGAGAGGGCTACAGCCAGAGCGGCCAGACACAGCAAGTTGCCGACCCACATCTCCACTGCTGATTCTCTGTGTGTAATGGTGTCTTCCCTCTCCAACCCTGGCTTTTATCCTGTCTAGGATTAGCTCATTCTGTGGGAGGAGTTTCAGGGGTGAATCCCCCGTGGGGTGCGTTACTTCCCAGCAGTAGAGTTGGGAAACCAGCCGGCTTGATAAGAGTAGTTGGAAAGTCCACTGTTAAGCAAAACAAACAGCTCAAAATCTATCAGAGAGATATACAGGTTGGAAATGTACTAGACCTGTGGAACTAATCTGATTTACATTTAACCACTGAAATAAACAACTTAATAATACATAATGGCAAAAAAAGTGATGTTATTAACCAGAAAATGCACATGGACGTGCTATTATCAAAGCCGAAGCTAACTAACTCCATTAGTTCAGATCTGGTTTCAAGACAAGTCAACTTGTCATGCATGATACAGTCACTGTCACAACAACAGAAACACCCTAAATGCCAAGGAGAGCTCGGGTCTcagcgcacacgcgcacacacgcacacacgcacacacgcacacacgcacacacgcacac

Function

GO: NA

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU159910 lncRNA upstream 112 37776591 ~ 37776949 (+) True G139040
TU159908 lncRNA upstream 3557 37772990 ~ 37773504 (+) True G139038
TU159831 lncRNA upstream 83880 37692982 ~ 37693181 (+) True G138991
TU159626 lncRNA upstream 186504 37535056 ~ 37590557 (+) True G138805
TU159453 lncRNA upstream 244948 37531419 ~ 37532113 (+) True G138640
TU159990 lncRNA downstream 120892 37944902 ~ 37945164 (+) True G139102
TU159991 lncRNA downstream 121334 37945344 ~ 37945605 (+) True G139103
TU160029 lncRNA downstream 179056 38003066 ~ 38007585 (+) True G139139
TU160059 lncRNA downstream 212465 38036475 ~ 38036812 (+) True G139167
TU160070 lncRNA downstream 224928 38048938 ~ 38049391 (+) True G139177
XM_036947668.1 mRNA upstream 13346 37699215 ~ 37763715 (+) False LOC110501519
XM_021561609.2 mRNA downstream 39191 37863201 ~ 37888589 (+) False LOC110489035
XM_021561587.2 mRNA downstream 39193 37863203 ~ 37890510 (+) False LOC110489035
XM_021561592.2 mRNA downstream 39194 37863204 ~ 37890510 (+) False LOC110489035
XM_021561600.2 mRNA downstream 54642 37878652 ~ 37890510 (+) True LOC110489035
XM_021561628.2 mRNA downstream 67941 37891951 ~ 37911330 (+) False sh3d21
TU158176 other upstream 1375090 36395286 ~ 36401971 (+) True LOC110488849
TU158178 other upstream 1391205 36381892 ~ 36385856 (+) False LOC110488849
TU157787 other upstream 1676784 36099611 ~ 36100277 (+) True G137058
TU157722 other upstream 1739320 35982832 ~ 36037741 (+) True G136994
TU157486 other upstream 1920661 35855228 ~ 35856400 (+) False LOC100653444
TU159966 other downstream 95725 37919735 ~ 37922070 (+) False G139089
TU159964 other downstream 96093 37920103 ~ 37922184 (+) False G139089
TU159962 other downstream 96338 37920348 ~ 37922583 (+) False G139089
TU159972 other downstream 96338 37920348 ~ 37922070 (+) False G139089
TU159974 other downstream 96381 37920391 ~ 37922070 (+) False G139089

Expression Profile