RNA id: TU159966


Basic Information

Item Value
RNA id TU159966
length 2314
RNA type TUCP
GC content 0.41
exon number 2
gene id G139089
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 37919735 ~ 37940714 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cCGATGATTAAATAGAAACATAGTTTGACTTggtttaacaaagtttagcggtagcttttttgAATTCCTGCATGTTGAACTCAAattgatggcgccaactaaacatacttttttgggatacaaagaaggattttatctaaacgaccatgcatgttgtagtcaggaccctttggattgcaaatcagaggaagattttcaaaaagtaagtgattatttaatcgctatttgtgattttatgaagcctgtgctggttgaaaaatacgTTGATGTGGGGCGCAGTCCTCAAACAATCGAATGgcatgcttttgctgtaaagcctattgtaaatcagacaatgcagttagattaacaagaatttaagcttttaacctaTATACGACACTTGTCTGTACCTAGATGTTTAATATCCAGAATTTTAAGATGGGTGTCCCGCTGATGGGACGCATAGCACTAAGAAGTTTTTTAATAATTTGAATAACCTGTACAGCTAAAGCCCAAGAGAACCAAACTGGATAATGATCATACCCAAGGTACATATGCAGCTTGTGTTATTCATCAACGTTCAACATGATTCTGTTGGCAATCAAATATCcttttttcctgtgttttatttcCGACAATAAAATAAGACTTTATTTCGTTTAGATAGACCACTGGGTTTTGCCAAAACATTTAGTAaacaagttttcaagatattgtaCTATAAAAATCATATCTATTTAACATTTCAAGGCACACATGGGAGCAATTGATTAAGAATAACAGTTCACTATGAGTGACCTTACAATCCATTGTAATTAAATGGTTCAACTGAGGtttttcagttgttaaatttcagcCCTAGACAATCTTTATATTGTACAGTATATTCAAAATACATAGTCTAGGAACATTTTAAGAAAGAGCATTGTTTGTCTAAAATACATTAAGTGTAACAGAAACAACCACAAGGCCTTTTGAGTTTCCCACTTTAATTACTTAATTTCCCCTAGTGTAATTGGTTCTGAAAACAGCCTAAAACTGTGTTCTTAAACTGAGCAAACTGAGCAGTCCAATTCCAAAATGACTTTGAAAAATCGTCTCACCGAATCCATTTCTATTTTCTCACAGAAGGTTCCAAGACCACTCTAAAGCATTGAGGATAATTTCCTAATATAATGACAAACAGCTCACGGCACTGTCCCGCTGTAAACTCACCAGTGTTGAGGGAAACATGGCCCCATAGCAAACAAAAGAAAGTGACCTCTCATTGCAAAATACTTGGTCCCTACTCCCTACAGTATCTCTGGCTATTTGTCAATGGCTGTATTAGTCCTTCCTTACTCCCTTTGTGTTTTTCTAAGGGCAATACTTTGTTCAGGCATCTCTCCACACTGTAGACTCCAATTATGATAAATGTTCCCGTTCACATGCCTAAATCACAAAGCAGCAGAACTGGTCTCAAAGGTGCCTTGTGGTATAACTCCATTATGGCAGTGGTAGTAGGTGACAAATGTTGATGGGGGAAATACATTCACACAGCACACCACTATCACATAGTGTTAGAGTCAAGACTTACACTTCAAGGGCCTGTTCAGAGGGATGTCACGTTACAGAATGTTCAGATAGAAACTTATCGTGCAGAACAGATATGTTTGTCTTTCAGGTAGAATAGTGAATTTTGTCAgctctattcattatatttctatctgcaacattcaGAAGATTTCACATCACTGAATACACCCCAGATCGAAGTAGCACGCCACTTGTGACCTGTCTGTATACAACAGCATGAGTGACACCCCTCATGGGAATCTGTCTTTGGCGGGTGTGGACCACAGTGTACCCCCTGATTCCATAGCACCATAGTTCTATATAGTATGTCCATTCAGTGGCCCAGTAGTACTGGACGTTAGTAGTAGTGCACCCGACCTATAGTGCCTGTTCCTGAACCCAGGATATCAGGCTGCCCATTCCTCCAGATCTCCCGTATGATTCGCTCCCTCTCCTCCAATCGCTGTGCCCTCTCTAGCTCCTCGGCCGACGTGAACACGTTAACGCTCAGTGTCCCGTCCGATTggctgtggttgtggtggttgcCAATGGGAATCTCTGTGGTGGGCATGGGGGCAGGTGCTTCGACgtcaccctcctcttcctcatcctcatcctcgcTATCTTCATCACATTCGTCCTCACTGAAGTCCTTCAGGTGTTTCTTCTCGGGCGTGGAGGCCGGGATGTTGGTGCGGGGCTTGCAGGAGATCCGGATGACCAGGAGGCAGAGGGTGAGGACCAGGCCAAAACAAACCCCAATCACAAAGTACAGCCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU159910 lncRNA upstream 142786 37776591 ~ 37776949 (+) True G139040
TU159908 lncRNA upstream 146231 37772990 ~ 37773504 (+) True G139038
TU159831 lncRNA upstream 226554 37692982 ~ 37693181 (+) True G138991
TU159626 lncRNA upstream 329178 37535056 ~ 37590557 (+) True G138805
TU159453 lncRNA upstream 387622 37531419 ~ 37532113 (+) True G138640
TU159990 lncRNA downstream 22832 37944902 ~ 37945164 (+) True G139102
TU159991 lncRNA downstream 23274 37945344 ~ 37945605 (+) True G139103
TU160029 lncRNA downstream 80996 38003066 ~ 38007585 (+) True G139139
TU160059 lncRNA downstream 114405 38036475 ~ 38036812 (+) True G139167
TU160070 lncRNA downstream 126868 38048938 ~ 38049391 (+) True G139177
XM_021561628.2 mRNA upstream 8405 37891951 ~ 37911330 (+) False sh3d21
XM_021561620.2 mRNA upstream 8405 37891953 ~ 37911330 (+) True sh3d21
XM_021561587.2 mRNA upstream 29225 37863203 ~ 37890510 (+) False LOC110489035
XM_021561592.2 mRNA upstream 29225 37863204 ~ 37890510 (+) False LOC110489035
XM_021561600.2 mRNA upstream 29225 37878652 ~ 37890510 (+) True LOC110489035
XM_021561732.2 mRNA downstream 796222 38718292 ~ 38734398 (+) False LOC110489135
XM_036947840.1 mRNA downstream 799201 38721271 ~ 38734398 (+) False LOC110489135
XM_036947848.1 mRNA downstream 799201 38721271 ~ 38734398 (+) True LOC110489135
XM_021561766.2 mRNA downstream 835163 38757233 ~ 38786447 (+) True LOC110489149
XM_036947868.1 mRNA downstream 867466 38789536 ~ 38823441 (+) False LOC110489163
TU159857 other upstream 95725 37777061 ~ 37824010 (+) False G139004
TU159860 other upstream 95725 37777061 ~ 37824010 (+) False G139004
TU159861 other upstream 95725 37777061 ~ 37824010 (+) False G139004
TU159862 other upstream 95725 37777061 ~ 37824010 (+) False G139004
TU159863 other upstream 95725 37777061 ~ 37824010 (+) True G139004
TU159989 other downstream 21672 37943742 ~ 37944012 (+) True G139101
TU160072 other downstream 129289 38051359 ~ 38051744 (+) True G139179
TU164559 other downstream 3617225 41539295 ~ 41541591 (+) True LOC110489834
TU165213 other downstream 4046304 41968374 ~ 41969317 (+) False G143938
TU165214 other downstream 4046304 41968374 ~ 41969222 (+) True G143938

Expression Profile