RNA id: TU159977


Basic Information

Item Value
RNA id TU159977
length 2214
RNA type TUCP
GC content 0.44
exon number 4
gene id G139089
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 37919735 ~ 37940714 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGTTTTGCCAAAACATTTAGTAaacaagttttcaagatattgtaCTATAAAAATCATATCTATTTAACATTTCAAGGCACACATGGGAGCAATTGATTAAGAATAACAGTTCACTATGAGTGACCTTACAATCCATTGTAATTAAATGGTTCAACTGAGGtttttcagttgttaaatttcagcCCTAGACAATCTTTATATTGTACAGTATATTCAAAATACATAGTCTAGGAACATTTTAAGAAAGAGCATTGTTTGTCTAAAATACATTAAGTGTAACAGAAACAACCACAAGGCCTTTTGAGTTTCCCACTTTAATTACTTAATTTCCCCTAGTGTAATTGGTTCTGAAAACAGCCTAAAACTGTGTTCTTAAACTGAGCAAACTGAGCAGTCCAATTCCAAAATGACTTTGAAAAATCGTCTCACCGAATCCATTTCTATTTTCTTACTTAGGCAAAGCTATTTTCTCACAGAAGGTTCCAAGACCACTCTAAAGCATTGAGGATAATTTCCTAATATAATGACAAACAGCTCACGGCACTGTCCCGCTGTAAACTCACCAGTGTTGAGGGAAACATGGCCCCATAGCAAACAAAAGAAAGTGACCTCTCATTGCAAAATACTTGGTCCCTACTCCCTACAGTATCTCTGGCTATTTGTCAATGGCTGTATTAGTCCTTCCTTACTCCCTTTGTGTTTTTCTAAGGGCAATACTTTGTTCAGGCATCTCTCCACACTGTAGACTCCAATTATGATAAATGTTCCCGTTCACATGCCTAAATCACAAAGCAGCAGAACTGGTCTCAAAGGTGCCTTGTGGTATAACTCCATTATGGCAGTGGTAGTAGGTGACAAATGTTGATGGGGGAAATACATTCACACAGCACACCACTATCACATAGTGTTAGAGTCAAGACTTACACTTCAAGGGCCTGTTCAGAGGGATGTCACGTTACAGAATGTTCAGATAGAAACTTATCGTGCAGAACAGATATGTTTGTCTTTCAGGTAGAATAGTGAATTTTGTCAgctctattcattatatttctatctgcaacattcaGAAGATTTCACATCACTGAATACACCCCAGATCGAAGTAGCACGCCACTTGTGACCTGTCTGTATACAACAGCATGAGTGACACCCCTCATGGGAATCTGTCTTTGGCGGGTGTGGACCACAGTGTACCCCCTGATTCCATAGCACCATAGTTCTATATAGTATGTCCATTCAGTGGCCCAGTAGTACTGGACGTTAGTAGTAGTGCACCCGACCTATAGTGCCTGTTCCTGAACCCAGGATATCAGGCTGCCCATTCCTCCAGATCTCCCGTATGATTCGCTCCCTCTCCTCCAATCGCTGTGCCCTCTCTAGCTCCTCGGCCGACGTGAACACGTTAACGCTCAGTGTCCCGTCCGATTggctgtggttgtggtggttgcCAATGGGAATCTCTGTGGTGGGCATGGGGGCAGGTGCTTCGACgtcaccctcctcttcctcatcctcatcctcgcTATCTTCATCACATTCGTCCTCACTGAAGTCCTTCAGGTGTTTCTTCTCGGGCGTGGAGGCCGGGATGTTGGTGCGGGGCTTGCAGGAGATCCGGATGACCAGGAGGCAGAGGGTGAGGACCAGGCCAAAACAAACCCCAATCACAAAGTACAGCCCAAAGCTCTCTGGGTTCTcttTGATGTGTGCATAGGCAGCTATGCTGTTGCTCAGGAGGTCCATCTCTTTCCTCTTTGCGTCCATGCTGACGATATATCCAGTAGCCTTTGCTTACACCATAAAATGAAGCTGTAGTGGTAACTATTCAGTCCCAGCTCATGATGGAAGTGGAGAGGTTTGCTGAATGATTGagctaccctctctctctgtctctctggatcTACGCCCCGTGCCCTTCTCTCCTCAGGCCGAACAGTTCATTTGGCCGCCCAAGTAAGTAGTACTGTCAAAGTGTCCTCTTAGGAAAGTTAATTCCTGTCGAGATAAGGTAAGGCTCAATGCTAGCCTCAGTCAAAACAGTCCACTTCTCGCATCCAGGTTGGCAAAATCAACACAACAAGCAATCCTGACTTTGTCAATCTTGCTCGTTCCTTGTGTGTGACTACTGCTGTTCTCCAGTCCCGGAGCGTGTAGAGAAACCTATAGGGAAGAGGTGGTGGCTTGTTCTGAATAACAGACTTTCCCTCTCCCTCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU159910 lncRNA upstream 143442 37776591 ~ 37776949 (+) True G139040
TU159908 lncRNA upstream 146887 37772990 ~ 37773504 (+) True G139038
TU159831 lncRNA upstream 227210 37692982 ~ 37693181 (+) True G138991
TU159626 lncRNA upstream 329834 37535056 ~ 37590557 (+) True G138805
TU159453 lncRNA upstream 388278 37531419 ~ 37532113 (+) True G138640
TU159990 lncRNA downstream 4188 37944902 ~ 37945164 (+) True G139102
TU159991 lncRNA downstream 4630 37945344 ~ 37945605 (+) True G139103
TU160029 lncRNA downstream 62352 38003066 ~ 38007585 (+) True G139139
TU160059 lncRNA downstream 95761 38036475 ~ 38036812 (+) True G139167
TU160070 lncRNA downstream 108224 38048938 ~ 38049391 (+) True G139177
XM_021561628.2 mRNA upstream 9061 37891951 ~ 37911330 (+) False sh3d21
XM_021561620.2 mRNA upstream 9061 37891953 ~ 37911330 (+) True sh3d21
XM_021561587.2 mRNA upstream 29881 37863203 ~ 37890510 (+) False LOC110489035
XM_021561732.2 mRNA downstream 777578 38718292 ~ 38734398 (+) False LOC110489135
XM_036947840.1 mRNA downstream 780557 38721271 ~ 38734398 (+) False LOC110489135
XM_036947848.1 mRNA downstream 780557 38721271 ~ 38734398 (+) True LOC110489135
XM_021561766.2 mRNA downstream 816519 38757233 ~ 38786447 (+) True LOC110489149
XM_036947868.1 mRNA downstream 848822 38789536 ~ 38823441 (+) False LOC110489163
TU159857 other upstream 96381 37777061 ~ 37824010 (+) False G139004
TU159989 other downstream 3028 37943742 ~ 37944012 (+) True G139101
TU160072 other downstream 110645 38051359 ~ 38051744 (+) True G139179
TU164559 other downstream 3598581 41539295 ~ 41541591 (+) True LOC110489834
TU165213 other downstream 4027660 41968374 ~ 41969317 (+) False G143938
TU165214 other downstream 4027660 41968374 ~ 41969222 (+) True G143938

Expression Profile