RNA id: TU159991


Basic Information

Item Value
RNA id TU159991
length 262
lncRNA type intronic
GC content 0.42
exon number 1
gene id G139103
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 37945344 ~ 37945605 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tccttgggatgtttaaagcttgggaaatctttttgtatccaaatccggctttaaacttcttcacaacagtatctcggacctgcctggtgtgttccttgttcttcatgatgctctctgcgcttttaacggacctctgagactatcacagtgcaggtgcatttatacggagacttgattacaaacAGGTGGATTgtgtttatcatcattagtcatttaggtcaacattagatcattcagagatcctcactgaacttctggagag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU159990 lncRNA upstream 180 37944902 ~ 37945164 (+) True G139102
TU159910 lncRNA upstream 168395 37776591 ~ 37776949 (+) True G139040
TU159908 lncRNA upstream 171840 37772990 ~ 37773504 (+) True G139038
TU159831 lncRNA upstream 252163 37692982 ~ 37693181 (+) True G138991
TU159626 lncRNA upstream 354787 37535056 ~ 37590557 (+) True G138805
TU160029 lncRNA downstream 57461 38003066 ~ 38007585 (+) True G139139
TU160059 lncRNA downstream 90870 38036475 ~ 38036812 (+) True G139167
TU160070 lncRNA downstream 103333 38048938 ~ 38049391 (+) True G139177
TU160073 lncRNA downstream 106744 38052349 ~ 38052700 (+) True G139180
TU160074 lncRNA downstream 107537 38053142 ~ 38053430 (+) True G139181
XM_021561628.2 mRNA upstream 34014 37891951 ~ 37911330 (+) False sh3d21
XM_021561620.2 mRNA upstream 34014 37891953 ~ 37911330 (+) True sh3d21
XM_021561587.2 mRNA upstream 54834 37863203 ~ 37890510 (+) False LOC110489035
XM_021561732.2 mRNA downstream 772687 38718292 ~ 38734398 (+) False LOC110489135
XM_036947840.1 mRNA downstream 775666 38721271 ~ 38734398 (+) False LOC110489135
XM_036947848.1 mRNA downstream 775666 38721271 ~ 38734398 (+) True LOC110489135
XM_021561766.2 mRNA downstream 811628 38757233 ~ 38786447 (+) True LOC110489149
XM_036947868.1 mRNA downstream 843931 38789536 ~ 38823441 (+) False LOC110489163
TU159989 other upstream 1332 37943742 ~ 37944012 (+) True G139101
TU159977 other upstream 4630 37920391 ~ 37940714 (+) True G139089
TU159962 other upstream 22761 37920348 ~ 37922583 (+) False G139089
TU160072 other downstream 105754 38051359 ~ 38051744 (+) True G139179
TU164559 other downstream 3593690 41539295 ~ 41541591 (+) True LOC110489834
TU165213 other downstream 4022769 41968374 ~ 41969317 (+) False G143938
TU165214 other downstream 4022769 41968374 ~ 41969222 (+) True G143938
TU166008 other downstream 4564725 42510330 ~ 42566030 (+) True G144661

Expression Profile