RNA id: TU160029


Basic Information

Item Value
RNA id TU160029
length 4456
lncRNA type antisense_over
GC content 0.44
exon number 2
gene id G139139
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 38003066 ~ 38007585 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TATCAAAGTTTATTGCTGACATGCATGTAGAGATTTGATGAAGTACAAAAATATGTCTTTTATACAAACTTTTTTTTCATCTCTGTACAATTAGCCAGGTTTTTGTATTAGGTGCTCATATCCAACAAAGCAGCTTACAACAAATCCTGCTGGTTTTCAACCATTTTTTACCACCACATCATACACCATCTATTTTCCAGTTGTAATATTCAGCAAATCAAATACATcgttaaactgacagatatttcCAATATTTTTGAATTATAGTAAAAATGAAAACTTAAGTTGAATGTTCATTAAATGAAAAATCAGTTGTATTATGAAAAACATTAGGTTTTTCTGTAAGACTCAAATTTCCAATTCTCCCTGGTTGGTTGATTTCAGGCAATTATAATTGTGGGACCACCttgaaagtaaaaaataaaaatcatgcAAAATCACATTTTACAAAGAGCTCAAGATCATGCTTCGTATGGTGCTTTCAGTCCACAGAAAATCTATGAAGGGGACAACTTTCATAGACAACTGGGACAAGTCCAACAGCCAAATGTGAACACTATCTTGATAATGCTTCAGATAATACATTACTATCAAGGGTCTTACCTAATAAAcctgcatatttatatccaataGTGGGTTATGGTCACCCTCAAGTAAGACGGGATCACAAATTTGCCTTCAACTTCAGCAAGGGCTGTGGAGTTCACAAAATATCCTTTTCTCATGAACTACTGACACACTATCAACTACAATACTGCTTTATACCCAGAAATTCACATTGAGGTGGGAAAAAAGCTAACATCTCATTACATGTATCTATTTATTTTTCTCAAAAGGTGGTGGCTAGCATTGCATCTAATGCATGTCTATATATAATTTGTGTTAAAGCAGGGCTGTTCAAGAGTGTGCAATGTTACAAAACATTCAGATGAAGATATGATTTCCTGTCATGTTGAATTTGGAATCATGTCAGTTCTATTCATCACATTCCTATCTGCAACATATCACCTTACTGAATGTACCCCTGATCAGAGCTGGTATCGTTCCACTAGATGGAAGCTCTACTGGTGTTGTCGCTGTAATGATGGTATTATATTTACATACTGACCAAAAGTCTGGTATGGGGCGATAAACAgttggcctggtcccagatctgtttgtgctggtcATTGTCAAGGAAACAGGAGTTGGCAAGTCTGCACAAACAGAACTGGGATCCGGGTAATAAACAGATCACTACCATAAATCATCATAATGCACGAttatttgtgtaaaaaatagaaCTATGCAGAGTCAGTCTCATTATTAGTGTAGCTTAAATCGACCACAAGTGTGTGGCaatggtaaaataaaatataaaaagagATCTTTAATGAACATGGCTGATGGAGAAAAAACTGCAATGGCAGCTCAAGTTTGAATGTTTGGAGAAACAAATGAAACCAGAACACTTCTTGCTTAAAGCTAAAAATGGAAAATGGATTTGATGCCTGAAAATGGACAGTGAATAAATAACAAAATTAACATACATGAAATTGAGGAAAAAGACAATTTACAATGAAATAGGACAAAACTGACTCAAGTTTCTACTCGTGATCAATTTGGATATAAATAGGGTGAAGGTCTAAGCAATGCAAATACTCATAAAGATGGGCAAGCTTATGTGAACAGATGACTAATATTGTTCACGAGTTAGTAGCTTAGCAACATTGGCAGCTATTTTTTTACAAACTTTGCTAACAaatgacaacattgccatctGTCTAAAGTAAATTTGCCGACATAATGGCAAACATTTTTCGTACTAAATATCTTcctactttagcaatgtcatcgtATTTCAAGGACACTAGTGTACTTTAGACGAAACAGCCGTTAGCGTCTGTGCAGAATGATTGGATTGATCACGACGTTTGTCACCACTACGGCACCGCCAGCAGAGGGAGGCTTGAGAATGTGCACAACGCGACAGACAACCTCACTGTTGAGTTTCTCTATGAAATATTACACTATTCAATTATCACTATCAACACCATAGTAAGTCTTTCATGCTCAGCTACTACATTATAACTTACAACAGCTAAAAGGGAGAGCTACTATGATCATCACGGTTTCGTTTGATTTTAAACTTGGCTACGCACTAGAGCATTCATGACTAAGACCGGGGCAAAATGAGGGATGCCCATCTTTCATAGCGGACACATGCAGTCCAGACAGTCTTAGAAAAGCCTGTATGTTCTCAGTGTGTGCGAGCAACTGAGGCAGGCAAGATAAACAGATTTGGAAGGATGGTTAGTTTAAGGATCTGCACTGACTCACCGGGCTTCAATAACGTGGCTCTAGTCGGCACCTACCACTGAAAAGGCTCTGGCTTAGTCTAATACACCCCTGGCCCGAATCACACTTATCTACACAATGACAATCACTGGCATTACCATTCATTCAAATTCATGCCCAATACCTGTCTCACAATAATGATGTCACAGGATAAACCGGGAAGTTGAATACCTGGAAGTTGTTCAGTGGTGAACGTGGGGGAGGTATCATTTCCTTGGCTAACAATCAGTTAAGACGCGCCATGATTTCACCACCCCCCAAAAATGATAGTGTCCACGTCGTGATTATTAACCAAAGATGCCAATTAGAAGAGCATTAACGGAAGAGGATCAACATTAAACATCTAATAAACGTCGCCCCATCCAGCTCTTCCAGGTACTTGACACctaaatgcaaaaaaaaatgggGGTGAGAGCAAAAGCAAGaaaacaatatcatctgctagaGTTAAAGACAGAAGTAGTCGATTTGGCCACCCTTTGATAGTTAGCATTTTCAATGTAGAATAGATAGAAGGGTAAAATGCTACTTATTAGTCATTAGGAAAAAAGCTTATTCATATCCCACATTCCAAACCATTATGCACCAAAACATAGTAATGCTTTCTGTCTACGGTGACAACACTACCCCGACAATTCCTTGTTTTCCGAGAATGGTGGACATGGTTTAAAatccacacaaaaaaataaaagtaaagatTGAGAGAGGTAGATTTGAAGTCTTCAGCTTAGAGACGGGACTAGTCCAGATAATTTTGGTTATGAGGAAACTAAAGAGAGTGAATTACATCCATGATCAAGTGATCTTAGTTTGGAGAGTTGAGGAGAGGGAGGTTAGAGGAAGGTTGCTACATGGTCCTTCTGGCCCTGTATTGCTCAGGGTTTTCAAGAATAAATGGGGGTAGGTAGGAGGGCGATGACCAGGTCTCAGCAGAGAGAAAcaaatggtgggggggggggggttccatgtCCAAACACACATGCGTGTCTGGTATCCCCCTGGCCTGTACGAGTCCATATGTGCccatagctggctggctggctgagtccATATGTGCCCAtaggtggctggctggctgagtccATATGTGCccatagctgGCTGGCTGAGTCCATATGTGCccatagctggctggctggctgagtccATATGTGCCCATAGCTGGCTGAGTCCATATGTGCCCATAGCTGGCTGGCTGAGTCCATATGTGCCcatagctggctggctgggtccATATGTGCccatagctggctggctggctgagtccATATGTGCccatagctggctggctggctgggtccATATGTGCccatagctggctggctggctgggtccATATGTGCCcatagctggctggctgggtccATATGTGCCCATAACTGGCTGGCTGAGTCCATATGTGCCCATAGCTGGCTGGCTGAGTCCATATGTGCCCATAGCTGGCTGGCTGAGTCCATATGTGCCCATAGCTGGCTGGCTGAGTCCATATGTGCCCATAGCTGGCTGGCTGAGTCCATATGTGCCCATAGCTGGCTGGCTGAGTCCATATGTGCCCATAGCTGGCTGGCTGAGTCCATATGTGCCCATAGCTGGCTGGCTGAGTCCATATGTGCCcatagctagctggctggctgaggGTACAGTGGGAGCCTTTGGTTGAGATCTTCAGATTCTCCAGCCATGTCATTCCTGTGCACACCACCGACACCCAGACTTGAAGTGTGAAACCCATCTGCTCCCACTCCACCTACCTAACTCTCCACAGCTAGGGATCCCTCTACCCAAGGGAGGGTCGGGCTAAGCTCCCATAGATACTAGTTTCAGGGTACCTTCCCGACCCAACCCTTGTCCCCCACCCCACTTGTCCCCCAGAGGGCAAGGTGATGGGTGAAGGGGCTACTTCCGGAGGAAGCGCTGGGCCAGGATGGCTGCGTCCAGAGGGCTGACGGGTGTGGCATCGTGGCCCAGGCGCCGCACGGGCGGGATGGAGCTGAACTGGCGCTTGGCGAGGAAACTGGCCTTGGCCTCGTGAATAGTGTTCTTCTCCTCGGCCAGCAGCAGCTGCTGGCGCATGTAGTTCTCAAACTCGTACTGTGACGACTCCTCCGTCATTTTCACC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU159991 lncRNA upstream 57461 37945344 ~ 37945605 (+) True G139103
TU159990 lncRNA upstream 57902 37944902 ~ 37945164 (+) True G139102
TU159910 lncRNA upstream 226117 37776591 ~ 37776949 (+) True G139040
TU159908 lncRNA upstream 229562 37772990 ~ 37773504 (+) True G139038
TU159831 lncRNA upstream 309885 37692982 ~ 37693181 (+) True G138991
TU160059 lncRNA downstream 28890 38036475 ~ 38036812 (+) True G139167
TU160070 lncRNA downstream 41353 38048938 ~ 38049391 (+) True G139177
TU160073 lncRNA downstream 44764 38052349 ~ 38052700 (+) True G139180
TU160074 lncRNA downstream 45557 38053142 ~ 38053430 (+) True G139181
TU160084 lncRNA downstream 56184 38063769 ~ 38064016 (+) True G139191
XM_021561628.2 mRNA upstream 91736 37891951 ~ 37911330 (+) False sh3d21
XM_021561620.2 mRNA upstream 91736 37891953 ~ 37911330 (+) True sh3d21
XM_021561587.2 mRNA upstream 112556 37863203 ~ 37890510 (+) False LOC110489035
XM_021561732.2 mRNA downstream 710707 38718292 ~ 38734398 (+) False LOC110489135
XM_036947840.1 mRNA downstream 713686 38721271 ~ 38734398 (+) False LOC110489135
XM_036947848.1 mRNA downstream 713686 38721271 ~ 38734398 (+) True LOC110489135
XM_021561766.2 mRNA downstream 749648 38757233 ~ 38786447 (+) True LOC110489149
XM_036947868.1 mRNA downstream 781951 38789536 ~ 38823441 (+) False LOC110489163
TU159989 other upstream 59054 37943742 ~ 37944012 (+) True G139101
TU159977 other upstream 62352 37920391 ~ 37940714 (+) True G139089
TU159962 other upstream 80483 37920348 ~ 37922583 (+) False G139089
TU160072 other downstream 43774 38051359 ~ 38051744 (+) True G139179
TU164559 other downstream 3531710 41539295 ~ 41541591 (+) True LOC110489834
TU165213 other downstream 3960789 41968374 ~ 41969317 (+) False G143938
TU165214 other downstream 3960789 41968374 ~ 41969222 (+) True G143938
TU166008 other downstream 4502745 42510330 ~ 42566030 (+) True G144661

Expression Profile