RNA id: TU160059



Basic Information


Item Value
RNA id TU160059
length 338
lncRNA type antisense_over
GC content 0.43
exon number 1
gene id G139167
representative True

Chromosome Information


Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 38036475 ~ 38036812 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


GAAAGAATACAGGTTAGAATTAACTTTACCTTAGTCGCTTGGATTTTTATGACATCATATGCAAACTCGTCTGGTCTCGATATCAAGGCCTCCCTGAGAGGAAGACAAATCAACATTattgttaaaggcccagtgcagtgaaAACGTGATTTTTTCCCTGTGTTTTACACACTACATGACCTAACATACATGGCCACCTGCTCATCTAACATctccttccaaaatcatgggcaataatatggagtttgtcccccctttgctgctataacagtcttatgggaaggctttccactagatgttggaacattgcagcgggtcactgaggtcgggcactgatg

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU160029 lncRNA upstream 28890 38003066 ~ 38007585 (+) True G139139
TU159991 lncRNA upstream 90870 37945344 ~ 37945605 (+) True G139103
TU159990 lncRNA upstream 91311 37944902 ~ 37945164 (+) True G139102
TU159910 lncRNA upstream 259526 37776591 ~ 37776949 (+) True G139040
TU159908 lncRNA upstream 262971 37772990 ~ 37773504 (+) True G139038
TU160070 lncRNA downstream 12126 38048938 ~ 38049391 (+) True G139177
TU160073 lncRNA downstream 15537 38052349 ~ 38052700 (+) True G139180
TU160074 lncRNA downstream 16330 38053142 ~ 38053430 (+) True G139181
TU160084 lncRNA downstream 26957 38063769 ~ 38064016 (+) True G139191
TU160381 lncRNA downstream 76176 38112988 ~ 38113228 (+) True G139452
XM_021561628.2 mRNA upstream 125145 37891951 ~ 37911330 (+) False sh3d21
XM_021561620.2 mRNA upstream 125145 37891953 ~ 37911330 (+) True sh3d21
XM_021561587.2 mRNA upstream 145965 37863203 ~ 37890510 (+) False LOC110489035
XM_021561732.2 mRNA downstream 681480 38718292 ~ 38734398 (+) False LOC110489135
XM_036947840.1 mRNA downstream 684459 38721271 ~ 38734398 (+) False LOC110489135
XM_036947848.1 mRNA downstream 684459 38721271 ~ 38734398 (+) True LOC110489135
XM_021561766.2 mRNA downstream 720421 38757233 ~ 38786447 (+) True LOC110489149
XM_036947868.1 mRNA downstream 752724 38789536 ~ 38823441 (+) False LOC110489163
TU159989 other upstream 92463 37943742 ~ 37944012 (+) True G139101
TU159977 other upstream 95761 37920391 ~ 37940714 (+) True G139089
TU159962 other upstream 113892 37920348 ~ 37922583 (+) False G139089
TU160072 other downstream 14547 38051359 ~ 38051744 (+) True G139179
TU164559 other downstream 3502483 41539295 ~ 41541591 (+) True LOC110489834
TU165213 other downstream 3931562 41968374 ~ 41969317 (+) False G143938
TU165214 other downstream 3931562 41968374 ~ 41969222 (+) True G143938
TU166008 other downstream 4473518 42510330 ~ 42566030 (+) True G144661

Expression Profile