Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00028280 |
| length | 755 |
| lncRNA type | retained_intron |
| GC content | 0.42 |
| exon number | 3 |
| gene id | XLOC_014226 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_007130.7 |
| NCBI id | CM002903.2 |
| chromosome length | 48449771 |
| location | 40115977 ~ 40165799 (+) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0046872 | metal ion binding | molecular_function |
| GO:0003676 | nucleic acid binding | molecular_function |
| GO:0003677 | DNA binding | molecular_function |
| GO:0008270 | zinc ion binding | molecular_function |
| id | description |
|---|---|
| ZDB-GENE-060503-672 | Predicted to enable sequence-specific DNA binding activity and zinc ion binding activity. Predicted to be located in nucleoplasm. Orthologous to human ZMYM4 (zinc finger MYM-type containing 4). |
| ensembl_id | ENSDART00000151763 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00029730 | lncRNA | upstream | 59884 | 40057836 ~ 40066591 (+) | True | XLOC_014224 |
| TCONS_00028271 | lncRNA | upstream | 71105 | 40052501 ~ 40055370 (+) | True | XLOC_014223 |
| TCONS_00028267 | lncRNA | upstream | 157017 | 39927406 ~ 39969458 (+) | True | XLOC_014222 |
| TCONS_00029729 | lncRNA | upstream | 374301 | 39750058 ~ 39752174 (+) | True | XLOC_014220 |
| TCONS_00030020 | lncRNA | upstream | 710774 | 39409323 ~ 39415701 (+) | True | XLOC_014219 |
| TCONS_00028282 | lncRNA | downstream | 27171 | 40156777 ~ 40163271 (+) | True | XLOC_014226 |
| TCONS_00030022 | lncRNA | downstream | 56297 | 40185903 ~ 40212192 (+) | False | XLOC_014227 |
| TCONS_00030023 | lncRNA | downstream | 56550 | 40186156 ~ 40192318 (+) | False | XLOC_014227 |
| TCONS_00030024 | lncRNA | downstream | 56550 | 40186156 ~ 40205470 (+) | False | XLOC_014227 |
| TCONS_00030025 | lncRNA | downstream | 56550 | 40186156 ~ 40212192 (+) | False | XLOC_014227 |
| TCONS_00028273 | mRNA | upstream | 12540 | 40069524 ~ 40113935 (+) | False | XLOC_014225 |
| TCONS_00028272 | mRNA | upstream | 12867 | 40069524 ~ 40113608 (+) | False | XLOC_014225 |
| TCONS_00028274 | mRNA | upstream | 12867 | 40071561 ~ 40113608 (+) | True | XLOC_014225 |
| TCONS_00028269 | mRNA | upstream | 86569 | 40026041 ~ 40039906 (+) | False | XLOC_014223 |
| TCONS_00028270 | mRNA | upstream | 98404 | 40026959 ~ 40028071 (+) | False | XLOC_014223 |
| TCONS_00028281 | mRNA | downstream | 15794 | 40145400 ~ 40165799 (+) | False | XLOC_014226 |
| TCONS_00028283 | mRNA | downstream | 42354 | 40171960 ~ 40210392 (+) | False | XLOC_014227 |
| TCONS_00028284 | mRNA | downstream | 47640 | 40177246 ~ 40182642 (+) | True | XLOC_014228 |
| TCONS_00028287 | mRNA | downstream | 119091 | 40248697 ~ 40328549 (+) | False | XLOC_014229 |
| TCONS_00028288 | mRNA | downstream | 121076 | 40250682 ~ 40324288 (+) | False | XLOC_014229 |
| TCONS_00028268 | other | upstream | 71084 | 40025928 ~ 40055391 (+) | False | XLOC_014223 |
| TCONS_00028266 | other | upstream | 251528 | 39874831 ~ 39874947 (+) | True | XLOC_014221 |
| TCONS_00028264 | other | upstream | 1177789 | 38948572 ~ 38948686 (+) | True | XLOC_014217 |
| TCONS_00028262 | other | upstream | 1659824 | 38464131 ~ 38466651 (+) | True | XLOC_014213 |
| TCONS_00028260 | other | upstream | 1699792 | 38422059 ~ 38426683 (+) | False | XLOC_014213 |
| TCONS_00028293 | other | downstream | 207948 | 40337554 ~ 40344737 (+) | False | XLOC_014231 |
| TCONS_00028303 | other | downstream | 828894 | 40958500 ~ 40958616 (+) | True | XLOC_014238 |
| TCONS_00028333 | other | downstream | 2059384 | 42188990 ~ 42189104 (+) | True | XLOC_014257 |
| TCONS_00028342 | other | downstream | 2207711 | 42337317 ~ 42337431 (+) | True | XLOC_014261 |
| TCONS_00028353 | other | downstream | 2603082 | 42732688 ~ 42735285 (+) | False | XLOC_014270 |
