RNA id: TCONS_00028281


Basic Information

Item Value
RNA id TCONS_00028281
length 3705
RNA type mRNA
GC content 0.48
exon number 21
gene id XLOC_014226
representative False

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 40115977 ~ 40165799 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TTCAGAGAGATTCATGAAGACAGCAGCATCATAGTTGCCCCAGTGGACATGTCAGGGGCTGGGAAGGAGTTTTGCAGTCAGAAATGCCGCAACGCTTTAACTTTTAAGTGCAGTGTGTGTCAGAAGGCAGGAATAAGACACGTTCATGAGGTGAACTTCAGAGGCTCCATTCAAAAGCTGTGCAGCGATGGCTGCTTCAACCAGTTCCGCTCCTCCAATAAGCTGAACATGAACAGCTGTGTGAACTGTGGAGGATTCTGCTATGGCACAGACGCTCAGTGTCCATCTCTGCGCATGGAAGACAGAGTTATGAAGTTCTGCAGCCAAACCTGCCTTACAGCTTACAAAAAGAGGAGCCTGAAACTTGTCACCTGTAAGACGTGTCATGCCCTGAGGCCTGCGGAAGATGCACTGGACAGTCCAAACGCAGAGGGAATCCGGGAGCTTTTCTGCTCTGTCTCCTGTGTCACTGCGAGTAAAGATCAGACCGTGGGTTTGTCAGCTGCTCCAGTGGAATGCAACAACTGCAAGCTGAAACTAGTGCCTCAGTACCACATAGCCATGTCTGAAGGATCCGTTCAAAACTTCTGCACATTCTCCTGCGTAGTAGCATATCAGGAATCCTTGAATAATAAAAAAGCGAACACACAAGTGAACACCGTAACCTCTACAAGCAGCAACACAACTACTGCAGCAAAAACTGCTGCCCCCAAACCTGCTTCATCGGAGTCCAGCTCAGCAGCCAAGACTAGCACCCCTAGTGGTCAAGGCCAAAACGTCACTAAAATCCCCTGCTGTCAGTGTCTGAACGCCTTCTTCCACAAGCCAGAACTGATGGAGTATAAGaggaAAATGTACGCTTTCTGTGGCAACGATTGTATCGATGAGTTCAGAAAGGTCAACCGTGTGGTGGCTCGCTGTGAAAACTGCAACCTCAATAAAAGAGTCAAAGTCGTGAGAAGGATAAACAGAGTTGACCGCTCTTTCTGCGAAGAGAAATGCAGGGCACTCTTTGAGCAGAACCTGGTCAAGCGTTGGGGGACAAAGCACTGTAGCAATTGTTTCCACTGTAACAGCACTTCTAAGACTGTAGTGACGGAAGTCTTCAATGGCAAACAGGAGGAGTTCTGTGGGAGCGATTGCTTGTCACAACATAATTTACTGATTCGTCagGAAATAAAGTGCTCAATGTGCAGACAGATCAAGAAGATGAACGAGTCTGTGAAATGGCTGGGAGAGATGAAGCACTTCTGCAGCCTGCGGTGCCTGATGTTTTTCTGCAGTCTGCAGGGCATCACTGGAGCCGTCATCAAGGCAACCAGCAAATCTCTGGCCACACAGTGTGCAAAGCCAATGTCATCTGCAGTCACACAGAAGCCTAAAGAGGCCACGCCGGTCATTGCCAGTGTCGTTTCACTTTCAGGGCCATCCAGCAAACAGCCAGGCGTTTCAGGAAACACGAATGCGAAAGGCTCTGTTCAAACAGATGTGACCATGAAGCATAAACGTAATCTGAGATCCCAAATCCTACAGAACAAATCCCCAAGCAAAAACAAATCCACAACCTGTAAACCCCACACCGCTGATGCTGAGATACAGAAAGATGAGGCACCTAAAGTGATAGTGCTGCCTGTTCCGGTGCCAGTCTATGTGCCAGTTCCCATGAATCTCTACTCTCAATATGTTCCAAAGTCTGTTGGGATGCCCCTTCCGGTTCCAGTGCCCTTGTTCTTCCCCACGACTCTGGACAGCGCCGAACACATTGTACAGACCATTCAGGAAATCAAAGAGAAGATCCCTGATGATCCTCTGGAGGCCGACCTCATCATGATGGCGGAGATGGTGGCGGAGGATGCAGAGAAGGAGAAACACATCAGCTCCTGTGATCAGACTGATAACATTATGGAGGATCTCGATTTGCAAGATCTGTCTAGTAATCTGAGCTGGGAGGAGGATCCTGTGTCTCCTGCTCAAATTTTGGATCAAACCCCAGAACCtgaaccaccaccaccaccacctcctcctgCTCCTGCTTCTACTCCTACTCCTACTTTTGCTCCTGCTTCTACTCCTACTTTTGCTCCTGCTTCTACTCCTACTCCTACTTTTGCTCCTGTTTCTACTCCTACTTTTGCTCCTGCTCCATCATCCAGATCTGCCACAATGACACTCGTCTCCACCAAAGCAGGGGAGCCACTGATGGACTTGGAGGCGGATTTCCCAATTGAGACCATTGCGCTTCTCAGAGAGCAAATGGAAAATGATTCTGGAAAACGGAGATCTTGCAAGAAAGGACCTGATGTCTCAACTCAGAAGAAACGGGGTCGTAAGTGTGCGTCTGTTCCTTCAAACATCCTCTCCAAACTGCAACACGAGTACGGCGTCAAGGCCTGGAGGGACTGGGTACGCTGGAAAAACGCCCAACCCAACTCGGATGCTCCTAAATTTGGCTCACGCAGCATGACACTAAAGGAGGACGTGTTGAAGTGTTGCACGGCAGAATTAAGCTACGGTCTCTGTAAGTTTATCACTGAAGTCCGGCGACCCAATGGAGAGAAATACAGTCCTGACAGCATCTATTACCTCTGCTTGGGCATCCAGCAGTACCTGTTTGAGAACAATCGGATGGAGAACATCTTCTCAGATGTCTTCTACACTAAATTCTGCTGGGAAATGAGCAACATACTCAAGGGGTGGAAACCAACTATTCTGCCTAATGGTTATATTCACTCTCGTGTGGAAGAGGAGTTTCTGTGGAACTGTAAGCAGCTCGGGGCCTTTTCACCTGGCGTTCTGCTCAACACTTTAATCTATTTCTTCACAAAGTACTTTAACTACAGGACCGTGGAGCAGCACCGTCTCCTCTCTTTCGCACACGTCAAACGTTACACTCGGGGGCCGGCCAACGCTAAAGTGTCCTTCCTGCGTTTCTACCCACCAAAAGAGGACTCAAGCGACGATGGTGTCCctgcaaagaaaagaaagaaggacGATGAACGACAAAGGGTGCTTAAGATAGGGCAGAATTCAGACAATCCCCTCCATTGTCCCGTCAGGCTTTACGAGTTTTATCTCTCAAAATGCTCGCCTGGCATTAGGCATCACGCAACCAAGTTTTACCTGAGCCCCGAGCGCTCCTGTGTTCCCAGCAGCCCTACATGGTTCTCCATCAGCGCTCTGAGCGACGAGGCTCTGGACAGCATGTTATCCCGCATCCTCACAGTCCGAGAGCTTCATATGGAGACAGAGCAAACACCCGCTGACACTGATTCAGACAGCGACTCTGACTACAATCAGTTTTAAGACCACAAACCTGAGCTCGTCCTCTGAAGTAGTTCTGGAAAGCAAGCGGTTTGTTATTGTGTCCGTTGTTGTTCATTCTCAGTTATCTATTACTGGCTCTAGATACCTATATGTCTTGTTCCCCGACATCTTTCATTTTTTCAAAGTTTCTTCCGGATGTCCAGGATGCTTGAACTCCTCCAGCGGTGGACGCTGATCACTCATTAAACTCATTATTGTAAGTCACCACAATTTGTATTCTATCGATACACTAAAGACATTGGCAGCATCATTCCAAAAGAACACTATTTTGACATTGCTGTTCTTCATCGCAAACCATATTAGTATGTATTGAATGAATGTTCCCAAAATTATGGATgttattgcttttttgtttttatggatAAAACACTACGAAACTAA

Function

GO:

id name namespace
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-060503-672 Predicted to enable sequence-specific DNA binding activity and zinc ion binding activity. Predicted to be located in nucleoplasm. Orthologous to human ZMYM4 (zinc finger MYM-type containing 4).

Ensembl:

ensembl_id ENSDART00000049968

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00030021 lncRNA upstream 15794 40116262 ~ 40129606 (+) False XLOC_014226
TCONS_00028280 lncRNA upstream 15794 40126475 ~ 40129606 (+) False XLOC_014226
TCONS_00028279 lncRNA upstream 18379 40122409 ~ 40127021 (+) False XLOC_014226
TCONS_00029730 lncRNA upstream 78809 40057836 ~ 40066591 (+) True XLOC_014224
TCONS_00028271 lncRNA upstream 90030 40052501 ~ 40055370 (+) True XLOC_014223
TCONS_00030022 lncRNA downstream 20104 40185903 ~ 40212192 (+) False XLOC_014227
TCONS_00030023 lncRNA downstream 20357 40186156 ~ 40192318 (+) False XLOC_014227
TCONS_00030024 lncRNA downstream 20357 40186156 ~ 40205470 (+) False XLOC_014227
TCONS_00030025 lncRNA downstream 20357 40186156 ~ 40212192 (+) False XLOC_014227
TCONS_00028285 lncRNA downstream 20586 40186385 ~ 40191499 (+) False XLOC_014227
TCONS_00028275 mRNA upstream 15916 40115977 ~ 40129484 (+) False XLOC_014226
TCONS_00028278 mRNA upstream 16174 40122370 ~ 40129226 (+) False XLOC_014226
TCONS_00028273 mRNA upstream 31465 40069524 ~ 40113935 (+) False XLOC_014225
TCONS_00028272 mRNA upstream 31792 40069524 ~ 40113608 (+) False XLOC_014225
TCONS_00028274 mRNA upstream 31792 40071561 ~ 40113608 (+) True XLOC_014225
TCONS_00028283 mRNA downstream 6161 40171960 ~ 40210392 (+) False XLOC_014227
TCONS_00028284 mRNA downstream 11447 40177246 ~ 40182642 (+) True XLOC_014228
TCONS_00028287 mRNA downstream 82898 40248697 ~ 40328549 (+) False XLOC_014229
TCONS_00028288 mRNA downstream 84883 40250682 ~ 40324288 (+) False XLOC_014229
TCONS_00028289 mRNA downstream 157113 40322912 ~ 40324609 (+) True XLOC_014229
TCONS_00028276 other upstream 18636 40116262 ~ 40126764 (+) False XLOC_014226
TCONS_00028268 other upstream 90009 40025928 ~ 40055391 (+) False XLOC_014223
TCONS_00028266 other upstream 270453 39874831 ~ 39874947 (+) True XLOC_014221
TCONS_00028264 other upstream 1196714 38948572 ~ 38948686 (+) True XLOC_014217
TCONS_00028262 other upstream 1678749 38464131 ~ 38466651 (+) True XLOC_014213
TCONS_00028293 other downstream 171755 40337554 ~ 40344737 (+) False XLOC_014231
TCONS_00028303 other downstream 792701 40958500 ~ 40958616 (+) True XLOC_014238
TCONS_00028333 other downstream 2023191 42188990 ~ 42189104 (+) True XLOC_014257
TCONS_00028342 other downstream 2171518 42337317 ~ 42337431 (+) True XLOC_014261
TCONS_00028353 other downstream 2566889 42732688 ~ 42735285 (+) False XLOC_014270

Expression Profile

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