RNA id: TU161149


Basic Information

Item Value
RNA id TU161149
length 296
lncRNA type inter_gene
GC content 0.56
exon number 1
gene id G140175
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 38629931 ~ 38630226 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ttgatatctcattcactgctcaatagggacgcataggaacacagagctttctaaataagagtcccttcctgattggatttttctcaggctttcgcctgcaatatcagttctgttatactcacagacaatattttttacagttttggaaactttagagtgttttctctcctaagctgtcaattatatgcatattctagcatcttgtcctgacaaaatagcccgtttactttgggaacgttatttttcaaaaaatgaaaatagtgccccttaGTTTCAAGAGgtaaactgccttgctc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU160778 lncRNA upstream 246722 38379248 ~ 38383209 (+) True G139826
TU160737 lncRNA upstream 281153 38348472 ~ 38348778 (+) True G139785
TU160701 lncRNA upstream 303171 38326389 ~ 38326760 (+) True G139751
TU160700 lncRNA upstream 303619 38325962 ~ 38326312 (+) True G139750
TU160690 lncRNA upstream 313903 38315811 ~ 38316028 (+) True G139741
TU161166 lncRNA downstream 9087 38639313 ~ 38639796 (+) True G140192
TU161170 lncRNA downstream 12156 38642382 ~ 38642697 (+) True G140196
TU161172 lncRNA downstream 13617 38643843 ~ 38644077 (+) True G140198
TU161179 lncRNA downstream 21732 38651958 ~ 38652203 (+) True G140205
TU161186 lncRNA downstream 29153 38659379 ~ 38659620 (+) True G140212
XM_021561628.2 mRNA upstream 718601 37891951 ~ 37911330 (+) False sh3d21
XM_021561620.2 mRNA upstream 718601 37891953 ~ 37911330 (+) True sh3d21
XM_021561587.2 mRNA upstream 739421 37863203 ~ 37890510 (+) False LOC110489035
XM_021561732.2 mRNA downstream 88066 38718292 ~ 38734398 (+) False LOC110489135
XM_036947840.1 mRNA downstream 91045 38721271 ~ 38734398 (+) False LOC110489135
XM_036947848.1 mRNA downstream 91045 38721271 ~ 38734398 (+) True LOC110489135
XM_021561766.2 mRNA downstream 127007 38757233 ~ 38786447 (+) True LOC110489149
XM_036947868.1 mRNA downstream 159310 38789536 ~ 38823441 (+) False LOC110489163
TU160072 other upstream 578187 38051359 ~ 38051744 (+) True G139179
TU159989 other upstream 685919 37943742 ~ 37944012 (+) True G139101
TU159977 other upstream 689217 37920391 ~ 37940714 (+) True G139089
TU159972 other upstream 707861 37920348 ~ 37922070 (+) False G139089
TU164559 other downstream 2909069 41539295 ~ 41541591 (+) True LOC110489834
TU165213 other downstream 3338148 41968374 ~ 41969317 (+) False G143938
TU165214 other downstream 3338148 41968374 ~ 41969222 (+) True G143938
TU166008 other downstream 3880104 42510330 ~ 42566030 (+) True G144661
TU167624 other downstream 5100646 43730872 ~ 43731218 (+) True G146054

Expression Profile