RNA id: TU161480


Basic Information

Item Value
RNA id TU161480
length 287
RNA type TUCP
GC content 0.50
exon number 1
gene id G140479
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 38827909 ~ 38828195 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ggacgatggacggggccatgtaccgtcaaatcttgggtgagaacctccttccctcagccagggcattgaaaatgggtcatggatgggtattccagcatgacaatgacccaaaacacatggccaaggcaacaaaggagtggctcaagaagaagcacattaaggtcctggagtggcctagccagtctccagaccttaatcccatagaaaatctgtggagggagctgaaggttcgagttgccaaacgtcagcctcgaaaccttaatgacttggagaagatctgcaaagag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU161479 lncRNA downstream 1092 38826282 ~ 38826817 (-) True G140478
TU161471 lncRNA downstream 6015 38815558 ~ 38821894 (-) True G140470
TU161464 lncRNA downstream 8854 38817497 ~ 38819055 (-) True G140468
TU161469 lncRNA downstream 17302 38806968 ~ 38810607 (-) False G140468
TU161461 lncRNA downstream 36971 38789568 ~ 38790938 (-) True G140466
TU161481 lncRNA upstream 61 38828256 ~ 38828523 (-) True G140480
TU161482 lncRNA upstream 398 38828593 ~ 38828885 (-) True G140481
TU161484 lncRNA upstream 4594 38832789 ~ 38833029 (-) True G140483
TU161487 lncRNA upstream 9248 38837443 ~ 38837669 (-) True G140486
TU161491 lncRNA upstream 13487 38841682 ~ 38842212 (-) True G140490
XM_021561745.2 mRNA downstream 76680 38740727 ~ 38751229 (-) False LOC110489143
XM_021561718.2 mRNA downstream 333568 38379192 ~ 38494341 (-) True LOC110489131
XM_021561705.2 mRNA downstream 740511 38086165 ~ 38087398 (-) True LOC110489123
LOC110489095 mRNA downstream 774545 38048897 ~ 38053364 (-) True LOC110489095
XM_021561685.1 mRNA downstream 779503 38046700 ~ 38048406 (-) False LOC110489105
XR_002468535.2 mRNA upstream 24038 38852233 ~ 38854258 (-) True LOC110489186
XM_021561815.2 mRNA upstream 30311 38858506 ~ 38892046 (-) True LOC110489192
XM_021561909.2 mRNA upstream 124629 38952824 ~ 38958991 (-) False LOC110489249
XM_021561900.2 mRNA upstream 124629 38952824 ~ 38963779 (-) False LOC110489249
XM_021561889.2 mRNA upstream 124629 38952824 ~ 38963780 (-) True LOC110489249
TU160233 other downstream 779243 38046702 ~ 38048666 (-) False LOC110489105
TU160230 other downstream 779301 38046702 ~ 38048608 (-) False LOC110489105
TU160231 other downstream 779562 38046702 ~ 38048347 (-) False LOC110489105
TU160232 other downstream 779562 38046737 ~ 38048347 (-) True LOC110489105
TU160127 other downstream 1074951 37747441 ~ 37752958 (-) True G139231
TU161916 other upstream 235667 39063862 ~ 39064418 (-) True G140879
TU162487 other upstream 935738 39763933 ~ 39765170 (-) False G141363
TU162488 other upstream 935738 39763933 ~ 39765423 (-) False G141363
TU162490 other upstream 936312 39764507 ~ 39765170 (-) False G141363
TU162491 other upstream 936312 39764507 ~ 39765473 (-) True G141363

Expression Profile