RNA id: TU161349


Basic Information

Item Value
RNA id TU161349
length 2594
lncRNA type antisense_over
GC content 0.52
exon number 6
gene id G140363
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 38952835 ~ 38963883 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCTTTTATTATGATAAGCATTTGGGATAATCGGTTGGCAAGTGTGACTTGTGACTGTAGCAATGTAGAAAATGAAAACCAAGTAACAAAATATGTGTACAATAAGACATGTATCCTGTTTTGCACAGTCCCATCTCAAAGTATTCACAGTTACAGTGGCTGGCTATCAGTGCGTAGTTCTGACATTGTCTTGCACCCTATATAGTCTAGTCTATTTTATGCAATGAGACTTTAGTTAGCCTTTTAATAGTTATTCCTCAACCTCGCTGgttcagtaaaataaaaaatggtcCTGTGCTCTTCTCAACTTGTCGTCCACTTGCTCATAATCATGGTCACTGTCCTCATCTGCTTGAACTTCATATTTCGCCGCTTTATTGTTGGGCTTGTGACTTTTAGACTTGATGTAAGTGTTTGGCTGAGCCTTGCCTGACTTGACATCGGTCATAGGTTTTCTTGGATTCAGCGGAAGAGCATCATCCTTGAAATCCGGAGGCAGAGGAGCAGGGGGCCTTTGAGCCTTTTTGCTATCAAGACTTAGATCACTCAACAGGGAAAGGGTGCCGCTTTTGGGTGGAAGACAGGGGGCATCTGGGTGTGAGGGTGAAGGGGTTGCCTTGAAAGACTTTGAGCCTGACAATGGCTTTGAGCCTGACAATGGTTTTGAGGCTGACGGTGGATTTGATCTTGATGATGGCTTCGGCTTTGGTGGACGTGGTGGTGGGGGCTCATCTGATGCGGTGAGCTTTCGAAATTCGTAATAGAATGAGTCTGTCACCTCTGTAACTGTCTCCAGGTGATATTCTTGGGTCAAAGGCAAGGGGTCGTTAGTAAAAGACAAAGACATGTTAAGCCAGTCTGTGGGTATCTCAAAGCACCTCTCTGGCTTTCCTGGAAGGCTGGCCTGGACCATGGGCTGTATAGTAGCCTCCTGCAGCCTCAGGGATGAGAACCCCACCAGAGGATCTTTCTCCAGCTCTGCGTCACCGCTCACCACCTTAACGTCCAGTGGCAGAGCAAAGGCCTTGCACAAGTCCTTCAGGCTGTACTTCTTATTGTCCGTGAGCTTCTCCACAAAGTGGCTCTGCATGTACATGGGCAAATGGACCACCtcactctcctccttctcctcttcatcctcctcctcgtcatcGTCCACTTCTTGAAGACGTCTACATACAAGGACCTCCACGGTCTGGTTATTCTTCTCCTCCTGGCTGGTTCCTCCTCCGGGCAGCTTCACCTTCTCGCAGCGCAGCACCTCCAGCTGCTCGCCCACACTGAGTGCCAGAAgcccctcctcctccagctcctcactGTGCCGCGTCACCCTGACCGTGAGTAACGGCGCTTGGGTCGAGGCGGCGTACAGCTCGTACACCGACTCGAACTCCCGCGGCCTCCGTCGCAGCCGTCCCCCGTAGCTCTGCGACATTAGGAAGTACTGGCGGGCCTTGCGCCCCTTGAGACCCGAAGCCAGAACCATGGCTGAGGAACCACGCTTGTGAAGGACTAGAGGATGGCCCTTGTGTAGCTCAGCCAGCCAGGTACAACGGAACAGAGGCTGGCCCTCATGGTGCTCCAGTATTTCAGCCATTGTGGGGAAGGCCTCGTCTGGCTGTGCAAAGACCTCGAGCAGAGTGAGCGGGGTCACAAATGTCAAGTCTTGGGATTCCGTCGTCACGTCGACCACATCCACCTCCAAGCTGGAGGGGAACTTGACTATGTTCTTCCTCAAGTGCATGATGGCCTGGACCTGGTATATGGGGCTGAAGAATAGCGATGCCCCGTGCTTGGTCTTCTTGCTGAAGCAAAAGTGCCGGCTGCAGAGGTGGGGCGAGGACATGATCTCCTGGAGGGTGTAGGTCTGGTCACTCTCACACTCATAGAACTCCCCACGGCAGGAGTAGGGGATTAGCACGTCAGCCGAAGCCCCCTGCTGGCCTCTGAGTTGACAGCGGACGCAGCTCTCCTCACCCCCGTCCTGCTGCTCGATGTGTAGCATGGTCACGGCCATCCCGGCACCGAGCGTGAAATTCTGTAAGGTCAGCTCACATCGGCTGGTGAAGGTGAAGGGAAAGCAGGTGTCCAGGCCTACAGGCCTCAGACTCACCATCTCCTCCACTGTGCTGTATGGCATCTCCTCTGGAACCAGCTTGAACAGATCTGCATGGTTGATGGGCAGCTCAAACTTATCATTGTTGCTGGTGTCCTCACAGCTGACAGACAGGAGCTCGATGTCGATGACCTTCAACAGGTCCCCCGTGGACAGGCACACCTCGCTTCCCGACAGCTCATAAACAGAGCCTTGAAAGTATACCCCAGAGCAAACCTGCAGAATCCGTGGCAGACATGTTTTATCCAAGGATGCAATTAATTCTTGCAGGGACATAACTGTTTCAGTGCCTGCCATCACTGCAGTGCTGCCTCGATGTTGTGCTGTCAAGGCTCAACTGTGGTTCCAAGAGAGGTGCCACTGATCTAACAATCAAAAGCAACAATTGTATGAGGAAGTAGGCAACCAGATATTTTCAAGTAAAGTTAACCCCTACCCTGTGACACTAGCTTGTGTTGCCAATAAAGATATGTGAACTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU161300 lncRNA upstream 100773 38850907 ~ 38852062 (+) True G140318
TU161308 lncRNA upstream 105149 38847345 ~ 38847686 (+) True LOC110489178
TU161248 lncRNA upstream 245527 38707079 ~ 38707308 (+) True G140271
TU161241 lncRNA upstream 253090 38699431 ~ 38699745 (+) True G140264
TU161190 lncRNA upstream 292623 38659946 ~ 38660212 (+) True G140214
TU161301 lncRNA downstream 7274 38971157 ~ 38973817 (+) True LOC110489269
TU161310 lncRNA downstream 10189 38974072 ~ 38974620 (+) True G140325
TU161396 lncRNA downstream 29120 38993003 ~ 38993230 (+) True G140409
TU161600 lncRNA downstream 42965 39006848 ~ 39007112 (+) True G140595
TU161603 lncRNA downstream 50990 39014873 ~ 39015078 (+) True G140598
XM_021561873.2 mRNA upstream 724 38942222 ~ 38952111 (+) False LOC110489231
XM_021561880.2 mRNA upstream 729 38942241 ~ 38952106 (+) True LOC110489231
XM_021561835.2 mRNA upstream 16692 38928238 ~ 38936143 (+) False LOC110489198
XM_021561828.2 mRNA upstream 16692 38928240 ~ 38936143 (+) False LOC110489198
XM_021561842.2 mRNA upstream 16692 38928305 ~ 38936143 (+) True LOC110489198
XM_021561946.2 mRNA downstream 671 38964554 ~ 38973957 (+) False LOC110489269
XR_005039486.1 mRNA downstream 1465 38965348 ~ 38965501 (+) True LOC118944175
XM_021561959.2 mRNA downstream 23186 38987069 ~ 38990470 (+) True LOC110489273
XM_021561973.2 mRNA downstream 36838 39000721 ~ 39044657 (+) False LOC110489280
XM_036990520.1 mRNA downstream 206390 39170273 ~ 39195284 (+) False atp1a3
TU160072 other upstream 901091 38051359 ~ 38051744 (+) True G139179
TU159989 other upstream 1008823 37943742 ~ 37944012 (+) True G139101
TU159977 other upstream 1012121 37920391 ~ 37940714 (+) True G139089
TU159972 other upstream 1030765 37920348 ~ 37922070 (+) False G139089
TU164559 other downstream 2575412 41539295 ~ 41541591 (+) True LOC110489834
TU165213 other downstream 3004491 41968374 ~ 41969317 (+) False G143938
TU165214 other downstream 3004491 41968374 ~ 41969222 (+) True G143938
TU166008 other downstream 3546447 42510330 ~ 42566030 (+) True G144661
TU167624 other downstream 4766989 43730872 ~ 43731218 (+) True G146054

Expression Profile