RNA id: TU161603


Basic Information

Item Value
RNA id TU161603
length 206
lncRNA type intronic
GC content 0.47
exon number 1
gene id G140598
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 39014873 ~ 39015078 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cggatttcttctcttacatctgtaagcagagtctgaacatcagacaggatggcattgtctccctcaatccgtgcaatggctactgctataggtttcaggagtttcaggctgcttaccactctctcccaaaatacttcatccaggaggatcctcttaaTGGgactgtccatatcggcagactgatATGGTCGTTTCTTGGAGagtct

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU161600 lncRNA upstream 7761 39006848 ~ 39007112 (+) True G140595
TU161396 lncRNA upstream 21643 38993003 ~ 38993230 (+) True G140409
TU161310 lncRNA upstream 40253 38974072 ~ 38974620 (+) True G140325
TU161302 lncRNA upstream 41056 38861507 ~ 38973817 (+) False LOC110489269
TU161606 lncRNA downstream 3133 39018211 ~ 39018430 (+) True G140601
TU161613 lncRNA downstream 12097 39027175 ~ 39027490 (+) True G140608
TU161624 lncRNA downstream 24492 39039570 ~ 39039775 (+) True G140619
TU161595 lncRNA downstream 28191 39043269 ~ 39044491 (+) True LOC110489280
TU161629 lncRNA downstream 37582 39052660 ~ 39052928 (+) True G140624
XM_021561959.2 mRNA upstream 24403 38987069 ~ 38990470 (+) True LOC110489273
XM_021561946.2 mRNA upstream 40916 38964554 ~ 38973957 (+) False LOC110489269
XR_005039486.1 mRNA upstream 49372 38965348 ~ 38965501 (+) True LOC118944175
XM_021561873.2 mRNA upstream 62762 38942222 ~ 38952111 (+) False LOC110489231
XM_036990520.1 mRNA downstream 155195 39170273 ~ 39195284 (+) False atp1a3
XM_036933222.1 mRNA downstream 155201 39170279 ~ 39195284 (+) False atp1a3
NM_001124630.1 mRNA downstream 155439 39170517 ~ 39195241 (+) True atp1a3
XR_005039454.1 mRNA downstream 219282 39234360 ~ 39234415 (+) True LOC118944148
XM_021562059.2 mRNA downstream 221449 39236527 ~ 39255787 (+) False LOC110489329
TU160072 other upstream 963129 38051359 ~ 38051744 (+) True G139179
TU159989 other upstream 1070861 37943742 ~ 37944012 (+) True G139101
TU159977 other upstream 1074159 37920391 ~ 37940714 (+) True G139089
TU159972 other upstream 1092803 37920348 ~ 37922070 (+) False G139089
TU164559 other downstream 2524217 41539295 ~ 41541591 (+) True LOC110489834
TU165213 other downstream 2953296 41968374 ~ 41969317 (+) False G143938
TU165214 other downstream 2953296 41968374 ~ 41969222 (+) True G143938
TU166008 other downstream 3495252 42510330 ~ 42566030 (+) True G144661
TU167624 other downstream 4715794 43730872 ~ 43731218 (+) True G146054

Expression Profile