RNA id: TU161916


Basic Information

Item Value
RNA id TU161916
length 557
RNA type TUCP
GC content 0.34
exon number 1
gene id G140879
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 39063862 ~ 39064418 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tgtatatatatgtatatatacatattttattttttttgtttttttcgatgtactttactcaaaccagtgaatatcacttattataaatgagatcattaactatcagctcttggaatatccagggcctatactcttcacattttggttataaaacaactaatccagaattgattaaaaacatcaagggacaggacatcataatcctactggaaacatggtgtcgtggagacatagatactcagtgtccctcaggctatagagaaagtttactaccatcaatcaaacataaaaatgttaaacgaggccgagactcaggtggaatcatcatttggcataagcaggacttagcactgaatgaaatgaaaaaaggtaccactcacatttggctaaaacttaacaaaggtacaatctattgtgacaatgatgtatacatatgtgcagcttatgctcctccttcagattcatcatattatgatgatcagttttttgacaatctccagacagaaatcattacatttcaggcgcagggtaaagtgcttctttgtggagatttcaat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU161913 lncRNA downstream 6956 39056669 ~ 39056906 (-) True G140876
TU161907 lncRNA downstream 19384 39043275 ~ 39044478 (-) True G140870
TU161908 lncRNA downstream 22226 39041526 ~ 39041636 (-) True G140871
TU161899 lncRNA downstream 36058 39027567 ~ 39027804 (-) True G140862
TU161894 lncRNA downstream 44363 39019262 ~ 39019499 (-) True G140857
TU161921 lncRNA upstream 6861 39071279 ~ 39071687 (-) True G140884
TU161924 lncRNA upstream 8194 39072612 ~ 39072823 (-) True G140887
TU161957 lncRNA upstream 30125 39094543 ~ 39094766 (-) True G140914
TU161961 lncRNA upstream 36000 39100418 ~ 39100651 (-) True G140918
TU161968 lncRNA upstream 44677 39109095 ~ 39109316 (-) True G140925
XM_021561924.2 mRNA downstream 79890 38975605 ~ 38983972 (-) True LOC110489261
XM_021561889.2 mRNA downstream 100082 38952824 ~ 38963780 (-) True LOC110489249
XM_021561900.2 mRNA downstream 100083 38952824 ~ 38963779 (-) False LOC110489249
XM_021561909.2 mRNA downstream 104871 38952824 ~ 38958991 (-) False LOC110489249
XM_021561815.2 mRNA downstream 171816 38858506 ~ 38892046 (-) True LOC110489192
XM_036947875.1 mRNA upstream 133248 39197666 ~ 39209101 (-) False LOC110489287
XM_036947873.1 mRNA upstream 133248 39197666 ~ 39209108 (-) False LOC110489287
XM_036947874.1 mRNA upstream 133248 39197666 ~ 39209108 (-) False LOC110489287
XM_036947872.1 mRNA upstream 133248 39197666 ~ 39209110 (-) False LOC110489287
XM_021561994.2 mRNA upstream 133248 39197666 ~ 39209297 (-) False LOC110489287
TU161480 other downstream 235667 38827909 ~ 38828195 (-) True G140479
TU160233 other downstream 1015196 38046702 ~ 38048666 (-) False LOC110489105
TU160230 other downstream 1015254 38046702 ~ 38048608 (-) False LOC110489105
TU160231 other downstream 1015515 38046702 ~ 38048347 (-) False LOC110489105
TU160232 other downstream 1015515 38046737 ~ 38048347 (-) True LOC110489105
TU162487 other upstream 699515 39763933 ~ 39765170 (-) False G141363
TU162488 other upstream 699515 39763933 ~ 39765423 (-) False G141363
TU162490 other upstream 700089 39764507 ~ 39765170 (-) False G141363
TU162491 other upstream 700089 39764507 ~ 39765473 (-) True G141363
TU163223 other upstream 1160204 40224622 ~ 40241404 (-) False LOC110489653

Expression Profile