RNA id: TU161645


Basic Information

Item Value
RNA id TU161645
length 291
lncRNA type inter_gene
GC content 0.50
exon number 1
gene id G140640
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 39079406 ~ 39079696 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tttcgggtagccttccacaagcttcccacaataagttgggtgaattttgtcccattcctcctgacagagctggtgtaactgagtcaggtttgtaggcctccttgctcgcacacgctatttcagttctgcccacaaatgttctataggattgaggtcagggctttgtgatggccactccaatagcttgactttgttgtccttaagccatttgatatttttctggaattttccaaactgtttaaaggcacagtcaacttctgacccactggaattttaatactgtgaattata

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU161643 lncRNA upstream 6401 39072783 ~ 39073005 (+) True G140638
TU161633 lncRNA upstream 21909 39057200 ~ 39057497 (+) True G140628
TU161632 lncRNA upstream 22420 39056657 ~ 39056986 (+) True G140627
TU161631 lncRNA upstream 22962 39056238 ~ 39056444 (+) True G140626
TU161629 lncRNA upstream 26478 39052660 ~ 39052928 (+) True G140624
TU161657 lncRNA downstream 14932 39094628 ~ 39094911 (+) True G140652
TU161674 lncRNA downstream 27198 39106894 ~ 39107101 (+) True G140664
TU161680 lncRNA downstream 33368 39113064 ~ 39113353 (+) True G140670
TU161691 lncRNA downstream 45369 39125065 ~ 39125371 (+) True G140680
TU161697 lncRNA downstream 52785 39132481 ~ 39132796 (+) True G140686
XM_021561973.2 mRNA upstream 34749 39000721 ~ 39044657 (+) False LOC110489280
XM_021561959.2 mRNA upstream 88936 38987069 ~ 38990470 (+) True LOC110489273
XM_021561946.2 mRNA upstream 105449 38964554 ~ 38973957 (+) False LOC110489269
XR_005039486.1 mRNA upstream 113905 38965348 ~ 38965501 (+) True LOC118944175
XM_021561880.2 mRNA upstream 127300 38942241 ~ 38952106 (+) True LOC110489231
XM_036990520.1 mRNA downstream 90577 39170273 ~ 39195284 (+) False atp1a3
XM_036933222.1 mRNA downstream 90583 39170279 ~ 39195284 (+) False atp1a3
NM_001124630.1 mRNA downstream 90821 39170517 ~ 39195241 (+) True atp1a3
XR_005039454.1 mRNA downstream 154664 39234360 ~ 39234415 (+) True LOC118944148
XM_021562059.2 mRNA downstream 156831 39236527 ~ 39255787 (+) False LOC110489329
TU160072 other upstream 1027662 38051359 ~ 38051744 (+) True G139179
TU159989 other upstream 1135394 37943742 ~ 37944012 (+) True G139101
TU159977 other upstream 1138692 37920391 ~ 37940714 (+) True G139089
TU159972 other upstream 1157336 37920348 ~ 37922070 (+) False G139089
TU164559 other downstream 2459599 41539295 ~ 41541591 (+) True LOC110489834
TU165213 other downstream 2888678 41968374 ~ 41969317 (+) False G143938
TU165214 other downstream 2888678 41968374 ~ 41969222 (+) True G143938
TU166008 other downstream 3430634 42510330 ~ 42566030 (+) True G144661
TU167624 other downstream 4651176 43730872 ~ 43731218 (+) True G146054

Expression Profile