RNA id: TU161691


Basic Information

Item Value
RNA id TU161691
length 307
lncRNA type inter_gene
GC content 0.36
exon number 1
gene id G140680
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 39125065 ~ 39125371 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ccacaccgatctcgacaaaccgttTCTCTTTGGACCTCACTTTTTGCATgggggcattgtaatgctgaaacaggaaagggccttccccaaactgttgccacaaagttggaagcacagaatcgtctagaatgccattgtatgctgtagcgttaagatttcccttcactggaactaagggtagcgcaaaccatgaaaaatagccccagaccattattcctccaccagactttacagttggcaccatgCTTGGTGCAGGTAGCAtcctcctggcatccgccaaacccagattagtccgtcagactgccag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU161680 lncRNA upstream 11712 39113064 ~ 39113353 (+) True G140670
TU161674 lncRNA upstream 17964 39106894 ~ 39107101 (+) True G140664
TU161657 lncRNA upstream 30154 39094628 ~ 39094911 (+) True G140652
TU161645 lncRNA upstream 45369 39079406 ~ 39079696 (+) True G140640
TU161643 lncRNA upstream 52060 39072783 ~ 39073005 (+) True G140638
TU161697 lncRNA downstream 7110 39132481 ~ 39132796 (+) True G140686
TU161700 lncRNA downstream 18460 39143831 ~ 39144100 (+) True G140689
TU161701 lncRNA downstream 20589 39145960 ~ 39146188 (+) True G140690
TU161704 lncRNA downstream 23920 39149291 ~ 39149507 (+) True G140693
TU161707 lncRNA downstream 25706 39151077 ~ 39151284 (+) True G140696
XM_021561973.2 mRNA upstream 80408 39000721 ~ 39044657 (+) False LOC110489280
XM_021561959.2 mRNA upstream 134595 38987069 ~ 38990470 (+) True LOC110489273
XM_021561946.2 mRNA upstream 151108 38964554 ~ 38973957 (+) False LOC110489269
XR_005039486.1 mRNA upstream 159564 38965348 ~ 38965501 (+) True LOC118944175
XM_021561880.2 mRNA upstream 172959 38942241 ~ 38952106 (+) True LOC110489231
XM_036990520.1 mRNA downstream 44902 39170273 ~ 39195284 (+) False atp1a3
XM_036933222.1 mRNA downstream 44908 39170279 ~ 39195284 (+) False atp1a3
NM_001124630.1 mRNA downstream 45146 39170517 ~ 39195241 (+) True atp1a3
XR_005039454.1 mRNA downstream 108989 39234360 ~ 39234415 (+) True LOC118944148
XM_021562059.2 mRNA downstream 111156 39236527 ~ 39255787 (+) False LOC110489329
TU160072 other upstream 1073321 38051359 ~ 38051744 (+) True G139179
TU159989 other upstream 1181053 37943742 ~ 37944012 (+) True G139101
TU159977 other upstream 1184351 37920391 ~ 37940714 (+) True G139089
TU159972 other upstream 1202995 37920348 ~ 37922070 (+) False G139089
TU164559 other downstream 2413924 41539295 ~ 41541591 (+) True LOC110489834
TU165213 other downstream 2843003 41968374 ~ 41969317 (+) False G143938
TU165214 other downstream 2843003 41968374 ~ 41969222 (+) True G143938
TU166008 other downstream 3384959 42510330 ~ 42566030 (+) True G144661
TU167624 other downstream 4605501 43730872 ~ 43731218 (+) True G146054

Expression Profile