RNA id: TU161701


Basic Information

Item Value
RNA id TU161701
length 229
lncRNA type inter_gene
GC content 0.38
exon number 1
gene id G140690
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 39145960 ~ 39146188 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CACTAATCTAAGGTCAGTTCTTAATTTTCACCCTGATGGTTGAGGTTAGGATTatttaaaacaatattttttattgtCAGATACACCAGAtaagtgcagtgaaatgtgttgttttacagggtcagccatagtagtacattGCCCCTGCagtaaattagggttaagtgccttgctcaagggcaaatcGACAGATTATTTACCTTGTTGGCTTGTGTATTCGAACcagtaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU161700 lncRNA upstream 1860 39143831 ~ 39144100 (+) True G140689
TU161697 lncRNA upstream 13164 39132481 ~ 39132796 (+) True G140686
TU161691 lncRNA upstream 20589 39125065 ~ 39125371 (+) True G140680
TU161680 lncRNA upstream 32607 39113064 ~ 39113353 (+) True G140670
TU161674 lncRNA upstream 38859 39106894 ~ 39107101 (+) True G140664
TU161704 lncRNA downstream 3103 39149291 ~ 39149507 (+) True G140693
TU161707 lncRNA downstream 4889 39151077 ~ 39151284 (+) True G140696
TU161711 lncRNA downstream 16513 39162701 ~ 39162901 (+) True G140700
TU161712 lncRNA downstream 16929 39163117 ~ 39163326 (+) True G140701
TU161714 lncRNA downstream 18674 39164862 ~ 39165193 (+) True G140703
XM_021561973.2 mRNA upstream 101303 39000721 ~ 39044657 (+) False LOC110489280
XM_021561959.2 mRNA upstream 155490 38987069 ~ 38990470 (+) True LOC110489273
XM_021561946.2 mRNA upstream 172003 38964554 ~ 38973957 (+) False LOC110489269
XR_005039486.1 mRNA upstream 180459 38965348 ~ 38965501 (+) True LOC118944175
XM_021561880.2 mRNA upstream 193854 38942241 ~ 38952106 (+) True LOC110489231
XM_036990520.1 mRNA downstream 24085 39170273 ~ 39195284 (+) False atp1a3
XM_036933222.1 mRNA downstream 24091 39170279 ~ 39195284 (+) False atp1a3
NM_001124630.1 mRNA downstream 24329 39170517 ~ 39195241 (+) True atp1a3
XR_005039454.1 mRNA downstream 88172 39234360 ~ 39234415 (+) True LOC118944148
XM_021562059.2 mRNA downstream 90339 39236527 ~ 39255787 (+) False LOC110489329
TU160072 other upstream 1094216 38051359 ~ 38051744 (+) True G139179
TU159989 other upstream 1201948 37943742 ~ 37944012 (+) True G139101
TU159977 other upstream 1205246 37920391 ~ 37940714 (+) True G139089
TU159972 other upstream 1223890 37920348 ~ 37922070 (+) False G139089
TU164559 other downstream 2393107 41539295 ~ 41541591 (+) True LOC110489834
TU165213 other downstream 2822186 41968374 ~ 41969317 (+) False G143938
TU165214 other downstream 2822186 41968374 ~ 41969222 (+) True G143938
TU166008 other downstream 3364142 42510330 ~ 42566030 (+) True G144661
TU167624 other downstream 4584684 43730872 ~ 43731218 (+) True G146054

Expression Profile