RNA id: TCONS_00028286


Basic Information

Item Value
RNA id TCONS_00028286
length 1987
lncRNA type read_through
GC content 0.46
exon number 4
gene id XLOC_014227
representative True

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 40171960 ~ 40212192 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATCGATTTAACGCATTTTAACTTGTCGAGCGTTTCCCTTCAGGGACGCATTTTGCAAATTTATGAAGGTAATTCTTCGTTTAAAGTCGTATACCAGCGGATACAGTATGTGtggtCTGCCATACCTGATCTTTCTGGAAGGTTCTGGTGGCCTTCTGGAAGGACGATGGCAGAGTCAGCCAGCCCCGCAGGCATCGGGTGGAGGTGGAATCGCAGCGATATCCATGTTGACAACAGTGAATCCCATCCCTGCAACACTGACCCTGAAGCAGAGAAGAGAGTGAACAAAGGTTAACCCTGTAACTATGAGTAGAAACATATTAACTCGAGATTCTGTTACCATTGAGTAAGGACAACATGACCATATGCCATATGGACTCAGACAGCATGTTGTTCCGTCTGGACACACAGTTTGAGCATCGCAGTAAATCACAGAGGCAGAGGTGTCTACAGTCTCCACCGGGATAGACAGATCAAGCAGAGGCTCATCTGCAGCCACCAGAGCCGCCATGAGTAACATCAACACTGGGAACATCTGAAAATGTGAAATAGGAGAGTATTAgTGGTCTGCCATACCTGATCTTTCTCGAAGGTTCTGGTGGCCTCCTGGAAGGACGATGGCAGTGACAGCCAGCCTCGCAGGCATCGGGTGGAGGCGAAATTGCAACGATAACCGTGTCGACAGCAGTGAATCCCATCCCTGCAACACTGACCCTGAAGCAGAGGAGAGAGTGAGCAAAGGTTAACCCTGTAACTATGAGTAGAAGAATATAAAAAACAAGATTCTCTTACCATTGGGAATGGACAACATGTCCATTTGCCATATGGAGTCCGACAGCATGTTGTTCTATCTGGACACACAGTTCGAGCATCGCAGTGAATCACAGAGGCAGAGACGTCTTCAGTCTCCATCGGAATGGACAGATCCAGCAGAGGCTCATCTGCAGCCACCAGAGCCGCCATGAGTAACATCAACACTGGGAACATCTGAAAATGTGAAATAGGAGAATATTAgtatctcccaagctctatcaggttggatgggcaGCGACGATGTAcaaccattttcagatctctccagagatgtttaataggatttaggtgtggcggtgtgctttgggtcattgtcctgctgtaagatgccccagtctgaggtcaagagcactctgaagcaggttttcattcaggatgtctctgtacattgctgcattcatctttccctctatcctgactagtcttctagttcctgctgctgaaaaacatccccacaccaccatgcttcactgtaggggtGGGATTAGCCTTATGATAAGCGGTGTCTGGTTTTCTATAAACGTAACACCTGgtgttcactccaaagagttcaattttagtctcattagacccgaattttgtttcttatggtctgagagtccttcagatgggtTAGTCCTAAAATCCAGGCGGGCCTCTACACCTAACACGCctgaatgctggagctcagacagattGACCATTGGGTAATTGATCACccccctgactaaggcccttctcccccgatcactcagcttagatggccagccagctctaggaagagtcctggtggttccaaacatcttccacttatcgatgatggaggccactgtgctcactggaactttcagagcagcagaaatcttTCTGTAACCTTCCACAGTCTTGTGGCTCAAGACAATCCTgcctcggaggtctacagacaattcctttgtcttcatgcttggtttgtgctttgacatgcactgtcaaccctgggaccctatatagacaggtgtatgtcttttcaaatcatgtccaattaactgaatttaccacaggtgaactccaattaagctgctgaaacatctcaagaatgatcagtggaaacagaatgtacctgagctccaTTTAGAGCTTCgcgcaaaggctgtgaatactgatgaacatctgatttttcaggttttctatttataataaatttgcaacaatttcaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00028282 lncRNA upstream 23114 40156777 ~ 40163271 (+) True XLOC_014226
TCONS_00030021 lncRNA upstream 56779 40116262 ~ 40129606 (+) False XLOC_014226
TCONS_00028280 lncRNA upstream 56779 40126475 ~ 40129606 (+) False XLOC_014226
TCONS_00028279 lncRNA upstream 59364 40122409 ~ 40127021 (+) False XLOC_014226
TCONS_00029730 lncRNA upstream 119794 40057836 ~ 40066591 (+) True XLOC_014224
TCONS_00030027 lncRNA downstream 123242 40328712 ~ 40333094 (+) False XLOC_014230
TCONS_00030026 lncRNA downstream 123242 40328712 ~ 40333094 (+) True XLOC_014230
TCONS_00028294 lncRNA downstream 132094 40337564 ~ 40340629 (+) True XLOC_014231
TCONS_00030028 lncRNA downstream 486958 40692428 ~ 40736984 (+) True XLOC_014234
TCONS_00030029 lncRNA downstream 982342 41187812 ~ 41191519 (+) True XLOC_014243
TCONS_00028284 mRNA upstream 3743 40177246 ~ 40182642 (+) True XLOC_014228
TCONS_00028277 mRNA upstream 20586 40122160 ~ 40165799 (+) False XLOC_014226
TCONS_00028281 mRNA upstream 20586 40145400 ~ 40165799 (+) False XLOC_014226
TCONS_00028275 mRNA upstream 56901 40115977 ~ 40129484 (+) False XLOC_014226
TCONS_00028287 mRNA downstream 43227 40248697 ~ 40328549 (+) False XLOC_014229
TCONS_00028288 mRNA downstream 45212 40250682 ~ 40324288 (+) False XLOC_014229
TCONS_00028289 mRNA downstream 117442 40322912 ~ 40324609 (+) True XLOC_014229
TCONS_00028290 mRNA downstream 129801 40335271 ~ 40344757 (+) False XLOC_014231
TCONS_00028291 mRNA downstream 131987 40337457 ~ 40347943 (+) False XLOC_014231
TCONS_00028276 other upstream 59621 40116262 ~ 40126764 (+) False XLOC_014226
TCONS_00028268 other upstream 130994 40025928 ~ 40055391 (+) False XLOC_014223
TCONS_00028266 other upstream 311438 39874831 ~ 39874947 (+) True XLOC_014221
TCONS_00028264 other upstream 1237699 38948572 ~ 38948686 (+) True XLOC_014217
TCONS_00028262 other upstream 1719734 38464131 ~ 38466651 (+) True XLOC_014213
TCONS_00028293 other downstream 132084 40337554 ~ 40344737 (+) False XLOC_014231
TCONS_00028303 other downstream 753030 40958500 ~ 40958616 (+) True XLOC_014238
TCONS_00028333 other downstream 1983520 42188990 ~ 42189104 (+) True XLOC_014257
TCONS_00028342 other downstream 2131847 42337317 ~ 42337431 (+) True XLOC_014261
TCONS_00028353 other downstream 2527218 42732688 ~ 42735285 (+) False XLOC_014270

Expression Profile

//