RNA id: TU161716


Basic Information

Item Value
RNA id TU161716
length 378
lncRNA type inter_gene
GC content 0.36
exon number 1
gene id G140705
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 39166274 ~ 39166651 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ggatatatgaatgagtgatggtacagagcagcataggcaggatacagtagatggtatcgagtacagtatatacatgaggtgagtatgtaaacaaagtggcatagttaaagtggctagtgatacatgtattacataaggatgcagtcgatgatatagactacagtatatacgtatgcatatgagatgaataatgtagggtaagtaacattatataaggtagcattgtttaaagtggctagtgatatatttacatcatttcccatcaattcccattattaaagtggctggagttgagtcagtgtcagtgtcagtgtgttggcagcagccactcaatgttagtggtggctgtttaacagtctgatggccttgagatagaag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU161714 lncRNA upstream 1081 39164862 ~ 39165193 (+) True G140703
TU161712 lncRNA upstream 2948 39163117 ~ 39163326 (+) True G140701
TU161711 lncRNA upstream 3373 39162701 ~ 39162901 (+) True G140700
TU161707 lncRNA upstream 14990 39151077 ~ 39151284 (+) True G140696
TU161704 lncRNA upstream 16767 39149291 ~ 39149507 (+) True G140693
TU161718 lncRNA downstream 1815 39168466 ~ 39168739 (+) True G140707
TU161723 lncRNA downstream 11128 39177779 ~ 39180761 (+) True G140712
TU161668 lncRNA downstream 63968 39230619 ~ 39231307 (+) False G140658
TU161667 lncRNA downstream 64475 39231126 ~ 39231565 (+) True G140658
TU161770 lncRNA downstream 142018 39308669 ~ 39325188 (+) True G140753
XM_021561973.2 mRNA upstream 121617 39000721 ~ 39044657 (+) False LOC110489280
XM_021561959.2 mRNA upstream 175804 38987069 ~ 38990470 (+) True LOC110489273
XM_021561946.2 mRNA upstream 192317 38964554 ~ 38973957 (+) False LOC110489269
XR_005039486.1 mRNA upstream 200773 38965348 ~ 38965501 (+) True LOC118944175
XM_021561880.2 mRNA upstream 214168 38942241 ~ 38952106 (+) True LOC110489231
XM_036990520.1 mRNA downstream 3622 39170273 ~ 39195284 (+) False atp1a3
XM_036933222.1 mRNA downstream 3628 39170279 ~ 39195284 (+) False atp1a3
NM_001124630.1 mRNA downstream 3866 39170517 ~ 39195241 (+) True atp1a3
XR_005039454.1 mRNA downstream 67709 39234360 ~ 39234415 (+) True LOC118944148
XM_021562059.2 mRNA downstream 69876 39236527 ~ 39255787 (+) False LOC110489329
TU160072 other upstream 1114530 38051359 ~ 38051744 (+) True G139179
TU159989 other upstream 1222262 37943742 ~ 37944012 (+) True G139101
TU159977 other upstream 1225560 37920391 ~ 37940714 (+) True G139089
TU159972 other upstream 1244204 37920348 ~ 37922070 (+) False G139089
TU164559 other downstream 2372644 41539295 ~ 41541591 (+) True LOC110489834
TU165213 other downstream 2801723 41968374 ~ 41969317 (+) False G143938
TU165214 other downstream 2801723 41968374 ~ 41969222 (+) True G143938
TU166008 other downstream 3343679 42510330 ~ 42566030 (+) True G144661
TU167624 other downstream 4564221 43730872 ~ 43731218 (+) True G146054

Expression Profile