RNA id: TU161775



Basic Information


Item Value
RNA id TU161775
length 229
lncRNA type intronic
GC content 0.44
exon number 2
gene id G140758
representative True

Chromosome Information


Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 39329325 ~ 39329577 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


GTCTAGTTCTGGGTAAGTGTATTTTACGAATATAGCCCCACAGTGGTgttataatacccataaaacgAGGGAAATAGTTCCAATCGTTATACCATCATTAATTTTTAGAAACCATTCAAATGAAGGTCTGTGTTTAACGTAGGCTTACCCCGGGGGGATGTTTTTGATGACCTCGCAATCTCTCTCTAGGCTCAGGTGTAAATTCTAATTatttaacaccccccccccc

Function


GO: NA

KEGG: NA

JBrowse2


Loading

Neighbor


RNA id RNA type direction distance location representative gene id
TU161774 lncRNA upstream 2899 39326208 ~ 39326426 (+) True G140757
TU161770 lncRNA upstream 4137 39308669 ~ 39325188 (+) True G140753
TU161667 lncRNA upstream 97760 39231126 ~ 39231565 (+) True G140658
TU161668 lncRNA upstream 98018 39230619 ~ 39231307 (+) False G140658
TU161723 lncRNA upstream 148564 39177779 ~ 39180761 (+) True G140712
TU161784 lncRNA downstream 12205 39341782 ~ 39347457 (+) True G140766
TU161790 lncRNA downstream 19948 39349525 ~ 39349785 (+) True G140771
TU161791 lncRNA downstream 20559 39350136 ~ 39350359 (+) True G140772
TU161816 lncRNA downstream 73757 39403334 ~ 39403625 (+) True G140792
TU161760 lncRNA downstream 80656 39410233 ~ 39412741 (+) False LOC110501538
XM_036947890.1 mRNA upstream 9443 39298409 ~ 39319882 (+) False LOC110489375
XM_021562161.2 mRNA downstream 36831 39366408 ~ 39378286 (+) False LOC110489446
XM_021562156.2 mRNA downstream 36832 39366409 ~ 39378288 (+) False LOC110489446
XM_021562164.2 mRNA downstream 36834 39366411 ~ 39377858 (+) True LOC110489446
XM_021562186.2 mRNA downstream 50015 39379592 ~ 39385031 (+) False LOC110489493
XM_021562191.2 mRNA downstream 50017 39379594 ~ 39385031 (+) False LOC110489493
TU160072 other upstream 1277581 38051359 ~ 38051744 (+) True G139179
TU159989 other upstream 1385313 37943742 ~ 37944012 (+) True G139101
TU159977 other upstream 1388611 37920391 ~ 37940714 (+) True G139089
TU159972 other upstream 1407255 37920348 ~ 37922070 (+) False G139089
TU164559 other downstream 2209718 41539295 ~ 41541591 (+) True LOC110489834
TU165213 other downstream 2638797 41968374 ~ 41969317 (+) False G143938
TU165214 other downstream 2638797 41968374 ~ 41969222 (+) True G143938
TU166008 other downstream 3180753 42510330 ~ 42566030 (+) True G144661
TU167624 other downstream 4401295 43730872 ~ 43731218 (+) True G146054

Expression Profile


TU161775 Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 300.
End of interactive chart.

TU161775 Expression in each Bioproject

Bar chart with 13 bars.
TU161775 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 2000.
End of interactive chart.