RNA id: TU162331


Basic Information

Item Value
RNA id TU162331
length 2098
lncRNA type intronic
GC content 0.38
exon number 2
gene id G141226
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 39696361 ~ 39699522 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TACACCACGTCAATAATACACACCTACAACGCTACACTGTATGGCTCAGCTGGTACTATTAACACCAAGTTGTAAGTTCAATTCCCACATAGATTGTACACAAAGTGAAAAATGTAGGTATTTACTGCACTGTAAGTCACTTAGAATACATTTCTAAGTGGTGTAAAATACcagtacactactacaccactttacctcgctacactactataccactttaCCTCGTTACACTACTACACCGCTTTACCTCGCTACACTACTACACAGCTTTACCtcgctacactactataccactttacctcgctacactactacaccactttacctcgctacactactataccactttaCCTCgttacactactacaccactttacctcgctacactactataccactttacctcgctacactactacaccgctttacctcgctacactactataccactttacctcgctacactactacaccgctttacctcgctacactactataccactttacctcgctacactactacaccgctttacctcgctacactactataccactttaCCTCGTTACACTACTACACCGCTTTACCtcgctacactactataccactttacctcgctacactactacaccgctttacctcgctacactactataccactttacctcgctacactactacaccactttacctcgctacactactacacagctttacctcgctacactactataccactttacctcgctacactactacaccgctttacctcgctacactactacacagctttacctcgctacactactataccactttacctcgctacactactacaccgctttacctcgctacactactataccactttaCCTCGCTACACTACTACACCGCTTTACCTCGCTACACTACTACACAGCTTTACCTCGCTACACTACTACACCGCTTTACCTCGCTACACTACTACACAGCTTTACCTCGCTACACTACTATACCTTTTTCCCTGCTACACTACTACACCGCTTTACCTCGCTACACTACTACACCGCTTTACCTCGCTACACTACTACACAGCTTTACCtcgctacactactataccactttacctcgctacactactataccactttacctcgctacactactacactactacaccgctttacctcgctacactactacacagctttacctcgctacactactacacagctttacctcgctacactactacaccgctttacctcgctacactactataccactttaCCTCGCTACGCTACTACACCACTTTACCTCGCTACACTACTACACCGCTTTACCtcgctacactactataccactttacctcgctacactactacacagctttacctcgctacactactacaccgctttacctcgctacactactacaccgctttacctcgctacactactacaccgctttacctcgctacactactacaccgctttacctcgctacactactacaccgctttacctcgctacactactataccactttaCCTCGCTACACTACCACACAGCTTTACCtcgctacactactacaccactttacctcgctacactactatataactttacctcgctacactactacaccactttacctcgctacactactatacctctttacctcgctacactactacaccactttACCTCGCTACACTACTACACAGCTTTAcctcactacactactacacctctttacctcgctacactactataccactttaCCTCGCTACATTACTACACCGCTTTACCTCGCTACACTACTATACCGCTTTACCtcgctacactactataccactttacctcgctacactactacaccgctttacctcgctacactactacaccactttACCTCCCTACACTACTTCACCACTTCACTTCACgacactactataccactttacctcgctacactactataccactttaCCTttctacactactacaccactttACTTtgctacactactataccactttaCCTCGCTACACCACTACACCTACTGTAGCACAGCCACAGGAGACACATGGGCATCATCCACAGGCATTGGCTTTGAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU162241 lncRNA upstream 133624 39562435 ~ 39562737 (+) True G141148
TU162239 lncRNA upstream 135167 39560879 ~ 39561194 (+) True G141146
TU161831 lncRNA upstream 145588 39516493 ~ 39550773 (+) True G140804
TU161865 lncRNA upstream 194051 39502087 ~ 39502310 (+) True G140834
TU161836 lncRNA upstream 257777 39437955 ~ 39438584 (+) True G140809
TU162351 lncRNA downstream 25641 39725163 ~ 39725428 (+) True G141245
TU162354 lncRNA downstream 29238 39728760 ~ 39728997 (+) True G141248
TU162368 lncRNA downstream 42900 39742422 ~ 39742703 (+) True G141260
TU162369 lncRNA downstream 43366 39742888 ~ 39743107 (+) True G141261
TU162370 lncRNA downstream 43786 39743308 ~ 39743592 (+) True G141262
XM_021562327.2 mRNA upstream 148998 39540706 ~ 39547363 (+) True LOC110489590
XM_021562317.2 mRNA upstream 165503 39527602 ~ 39530858 (+) True LOC110489581
XM_021562306.2 mRNA upstream 171430 39521563 ~ 39524931 (+) True LOC110489572
XM_021562272.2 mRNA upstream 175739 39503436 ~ 39520622 (+) False LOC110489537
XM_021562345.2 mRNA downstream 122358 39821880 ~ 39862520 (+) True LOC110489609
XR_005036684.1 mRNA downstream 416436 40115958 ~ 40222642 (+) False LOC110489640
XM_036948247.1 mRNA downstream 416436 40115958 ~ 40225332 (+) False LOC110489640
XM_036948253.1 mRNA downstream 416910 40116432 ~ 40225332 (+) False LOC110489640
XM_036948250.1 mRNA downstream 417243 40116765 ~ 40225332 (+) False LOC110489640
TU160072 other upstream 1644617 38051359 ~ 38051744 (+) True G139179
TU159989 other upstream 1752349 37943742 ~ 37944012 (+) True G139101
TU159977 other upstream 1755647 37920391 ~ 37940714 (+) True G139089
TU159972 other upstream 1774291 37920348 ~ 37922070 (+) False G139089
TU164559 other downstream 1839773 41539295 ~ 41541591 (+) True LOC110489834
TU165213 other downstream 2268852 41968374 ~ 41969317 (+) False G143938
TU165214 other downstream 2268852 41968374 ~ 41969222 (+) True G143938
TU166008 other downstream 2810808 42510330 ~ 42566030 (+) True G144661
TU167624 other downstream 4031350 43730872 ~ 43731218 (+) True G146054

Expression Profile