RNA id: TU162499


Basic Information

Item Value
RNA id TU162499
length 374
lncRNA type inter_gene
GC content 0.37
exon number 1
gene id G141370
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 39771179 ~ 39771552 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ttggaggacacggaagcagtgttgtatggcattgaagctcgtttggaggttagttaacacagtgtccaaagaagggccagatgtatacagaatggtgtcgtctgcatagacgTGGATTAGGGAATCACCCGCTGCaaaagcgacatcattgatatatacagagaaaagagtcggcccgagaattgaaccctgtggcacccccatagagactgccagaggtccggacaacatgccctccgatttgacacactgaactctgtctgcgaagtagttggtgaaccaggcgaggcagtcatttcagaaaccaaggctattgagtctgccgataagaatacggtggttgacagagtcgaaagccttggccaggtcaatga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU162496 lncRNA upstream 1774 39769121 ~ 39769405 (+) True G141367
TU162246 lncRNA upstream 4811 39765951 ~ 39766368 (+) True znf407
TU162245 lncRNA upstream 5866 39764815 ~ 39765313 (+) False znf407
TU162378 lncRNA upstream 9917 39761038 ~ 39761262 (+) True G141270
TU162375 lncRNA upstream 13290 39757573 ~ 39757889 (+) True G141267
TU162501 lncRNA downstream 762 39772314 ~ 39772515 (+) True G141372
TU162506 lncRNA downstream 3942 39775494 ~ 39775716 (+) True G141377
TU162507 lncRNA downstream 4758 39776310 ~ 39776512 (+) True G141378
TU162541 lncRNA downstream 40568 39812120 ~ 39812427 (+) True G141412
TU162542 lncRNA downstream 41801 39813353 ~ 39813564 (+) True G141413
XM_036948220.1 mRNA upstream 4801 39569485 ~ 39766378 (+) False znf407
XM_036948222.1 mRNA upstream 4801 39569521 ~ 39766378 (+) False znf407
XM_036948223.1 mRNA upstream 4801 39571339 ~ 39766378 (+) False znf407
XM_021562327.2 mRNA upstream 223816 39540706 ~ 39547363 (+) True LOC110489590
XM_021562317.2 mRNA upstream 240321 39527602 ~ 39530858 (+) True LOC110489581
XM_021562345.2 mRNA downstream 50328 39821880 ~ 39862520 (+) True LOC110489609
XR_005036684.1 mRNA downstream 344406 40115958 ~ 40222642 (+) False LOC110489640
XM_036948247.1 mRNA downstream 344406 40115958 ~ 40225332 (+) False LOC110489640
XM_036948253.1 mRNA downstream 344880 40116432 ~ 40225332 (+) False LOC110489640
XM_036948250.1 mRNA downstream 345213 40116765 ~ 40225332 (+) False LOC110489640
TU160072 other upstream 1719435 38051359 ~ 38051744 (+) True G139179
TU159989 other upstream 1827167 37943742 ~ 37944012 (+) True G139101
TU159977 other upstream 1830465 37920391 ~ 37940714 (+) True G139089
TU159972 other upstream 1849109 37920348 ~ 37922070 (+) False G139089
TU164559 other downstream 1767743 41539295 ~ 41541591 (+) True LOC110489834
TU165213 other downstream 2196822 41968374 ~ 41969317 (+) False G143938
TU165214 other downstream 2196822 41968374 ~ 41969222 (+) True G143938
TU166008 other downstream 2738778 42510330 ~ 42566030 (+) True G144661
TU167624 other downstream 3959320 43730872 ~ 43731218 (+) True G146054

Expression Profile