RNA id: TU162541


Basic Information

Item Value
RNA id TU162541
length 308
lncRNA type inter_gene
GC content 0.32
exon number 1
gene id G141412
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 39812120 ~ 39812427 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tttctctccaACTCTGTGAATGTCTTCACTGGGCAGTGGAGCCGCTGATGAATTCTTAAGCAGATCACACTGATAATTGTATTTCATGACCGTCAGCTGTGCGAAGGCTGTCCTGGAGGGAGGGTGACTGCCAGCGCACTGAGGAGCTATTTGTGTCGTCGCCGTGTCTCCCCTGTTACATCCCCCCACTGTAAAACTCCAATCACCAGGGATGTGCTTACTGTCTTCAGCCTCGAATTACTCAATCAGGAGGACACATTTATTGATGACACCTTTATTACAATTAATCAGGGGAACTTGATTAAGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU162507 lncRNA upstream 35608 39776310 ~ 39776512 (+) True G141378
TU162506 lncRNA upstream 36404 39775494 ~ 39775716 (+) True G141377
TU162501 lncRNA upstream 39605 39772314 ~ 39772515 (+) True G141372
TU162499 lncRNA upstream 40568 39771179 ~ 39771552 (+) True G141370
TU162496 lncRNA upstream 42715 39769121 ~ 39769405 (+) True G141367
TU162542 lncRNA downstream 926 39813353 ~ 39813564 (+) True G141413
TU162561 lncRNA downstream 21112 39833539 ~ 39915052 (+) True G141429
TU162570 lncRNA downstream 36646 39849073 ~ 39849348 (+) True G141438
TU162619 lncRNA downstream 129722 39942149 ~ 39942372 (+) True G141486
TU162636 lncRNA downstream 155641 39968068 ~ 39968370 (+) True G141503
XM_036948220.1 mRNA upstream 45742 39569485 ~ 39766378 (+) False znf407
XM_036948222.1 mRNA upstream 45742 39569521 ~ 39766378 (+) False znf407
XM_036948223.1 mRNA upstream 45742 39571339 ~ 39766378 (+) False znf407
XM_021562327.2 mRNA upstream 264757 39540706 ~ 39547363 (+) True LOC110489590
XM_021562317.2 mRNA upstream 281262 39527602 ~ 39530858 (+) True LOC110489581
XM_021562345.2 mRNA downstream 9453 39821880 ~ 39862520 (+) True LOC110489609
XR_005036684.1 mRNA downstream 303531 40115958 ~ 40222642 (+) False LOC110489640
XM_036948247.1 mRNA downstream 303531 40115958 ~ 40225332 (+) False LOC110489640
XM_036948253.1 mRNA downstream 304005 40116432 ~ 40225332 (+) False LOC110489640
XM_036948250.1 mRNA downstream 304338 40116765 ~ 40225332 (+) False LOC110489640
TU160072 other upstream 1760376 38051359 ~ 38051744 (+) True G139179
TU159989 other upstream 1868108 37943742 ~ 37944012 (+) True G139101
TU159977 other upstream 1871406 37920391 ~ 37940714 (+) True G139089
TU159972 other upstream 1890050 37920348 ~ 37922070 (+) False G139089
TU164559 other downstream 1726868 41539295 ~ 41541591 (+) True LOC110489834
TU165213 other downstream 2155947 41968374 ~ 41969317 (+) False G143938
TU165214 other downstream 2155947 41968374 ~ 41969222 (+) True G143938
TU166008 other downstream 2697903 42510330 ~ 42566030 (+) True G144661
TU167624 other downstream 3918445 43730872 ~ 43731218 (+) True G146054

Expression Profile