RNA id: TU162570


Basic Information

Item Value
RNA id TU162570
length 254
lncRNA type intronic
GC content 0.40
exon number 2
gene id G141438
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 39849073 ~ 39849348 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCCTACTCTCTGCTAAAACGCTGATACACATGTGATTCCATTTCAGTTGTTATCATTCCCCAAATCAAATGaaacagacgtgtgtgtgtgtgtgtgtgtgtgtgtgttacacctcCAGCCCTAACATTATGTTGAGACAGTACAGAGTGAAAAGGAACACAGTCATCCCAGACCCATTAATCATAACACCATCTAGACCCCCGTGTCTCTCTGTCGGTCTACTCTCCAACAAGACTACACTCATCTGAAACCCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU162542 lncRNA upstream 35509 39813353 ~ 39813564 (+) True G141413
TU162541 lncRNA upstream 36646 39812120 ~ 39812427 (+) True G141412
TU162507 lncRNA upstream 72561 39776310 ~ 39776512 (+) True G141378
TU162506 lncRNA upstream 73357 39775494 ~ 39775716 (+) True G141377
TU162501 lncRNA upstream 76558 39772314 ~ 39772515 (+) True G141372
TU162619 lncRNA downstream 92801 39942149 ~ 39942372 (+) True G141486
TU162636 lncRNA downstream 118720 39968068 ~ 39968370 (+) True G141503
TU162640 lncRNA downstream 127291 39976639 ~ 39984542 (+) True G141507
TU162655 lncRNA downstream 154882 40004230 ~ 40007277 (+) True G141522
TU162754 lncRNA downstream 367446 40216794 ~ 40223435 (+) False LOC110489640
XM_036948220.1 mRNA upstream 82695 39569485 ~ 39766378 (+) False znf407
XM_036948222.1 mRNA upstream 82695 39569521 ~ 39766378 (+) False znf407
XM_036948223.1 mRNA upstream 82695 39571339 ~ 39766378 (+) False znf407
XM_021562327.2 mRNA upstream 301710 39540706 ~ 39547363 (+) True LOC110489590
XM_021562317.2 mRNA upstream 318215 39527602 ~ 39530858 (+) True LOC110489581
XR_005036684.1 mRNA downstream 266610 40115958 ~ 40222642 (+) False LOC110489640
XM_036948247.1 mRNA downstream 266610 40115958 ~ 40225332 (+) False LOC110489640
XM_036948253.1 mRNA downstream 267084 40116432 ~ 40225332 (+) False LOC110489640
XM_036948250.1 mRNA downstream 267417 40116765 ~ 40225332 (+) False LOC110489640
XM_021562443.2 mRNA downstream 459830 40309178 ~ 40319263 (+) True galr1a
TU160072 other upstream 1797329 38051359 ~ 38051744 (+) True G139179
TU159989 other upstream 1905061 37943742 ~ 37944012 (+) True G139101
TU159977 other upstream 1908359 37920391 ~ 37940714 (+) True G139089
TU159972 other upstream 1927003 37920348 ~ 37922070 (+) False G139089
TU164559 other downstream 1689947 41539295 ~ 41541591 (+) True LOC110489834
TU165213 other downstream 2119026 41968374 ~ 41969317 (+) False G143938
TU165214 other downstream 2119026 41968374 ~ 41969222 (+) True G143938
TU166008 other downstream 2660982 42510330 ~ 42566030 (+) True G144661
TU167624 other downstream 3881524 43730872 ~ 43731218 (+) True G146054

Expression Profile