RNA id: TU162655


Basic Information

Item Value
RNA id TU162655
length 3002
lncRNA type antisense_over
GC content 0.48
exon number 2
gene id G141522
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 40004230 ~ 40007277 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTGATGAAACCGGTTGAATGGTGCCATATTTGTGTATTTAATGTGGACATGATGACTTTACATTTTCTGCAACGATGTACAAAACTTTAACAGAACCGAGAAGGTCTCAGACGAGGTAGAGCTTTCATCGGGGACAGTGAAAACAAAGTGTAAAAACACATCTGAAAAGGATCAAATAAAACGAGTCCTGTCTGCTTCTGCTCTGATCATTGTAACTAATAAATACAGATGTCAACCAAATACATTCCAAATAATGTCATCTACGGAACAATTACAATGTAGTTAATTACAAATAAAAagccaacgcacacacacacacacacacaacttggaGACATTGTTAAAACCCCAACCAAATAGAAATAATGACTTTCACCACGTTCTTTGGGAGGGTAACCATGGCTATCTACTGAAGAAGttctacttttttttttagcaaagagagagagactaaaaacaCGCTCTTTATGAAACATATTTATGCGCCTATCGTTTTCCATTCGAAAACTGAACTGAGCAgtgtaataaaaaaaacaaacgcctaaaaaaaaaaaaacacatagcAAATGATATTAAATGAATCATGGATATCTATAATAATAGAACAAGACAGAAGACAGTTATAACGGGTTAAAGCAGTAACCTAGACTAAGTGCACCGGAAATGCCATTTGGTATCTAACGCTGTAACGGGTTCGGTACGAttataatacagacacacacacttacatacacacacgcacaaatactcactctctcactcccgcGTGGTCTGCTCATATCTGCTAAGTCACACTTAGGAGTACAAATGTGTATTTTAGGAGTTCATCTTAAAGGGTCATTCTGTACAACAGTATTTAAGGGCACTAATTATTAAGGACACTACTTGATAGGCTATATTATCCGTTTCAAGTATTTGACTATCCATCTttaatatacacatacagtatgtgtaggtaTACGCAAGCACATTGTTGTACGCATATTCAACCAACCATATAAAGTAACTGACACAGAAATGGTTTCATCTTGTGTTCATGTAAAAACTACTACCGAGGTCTCAAAGTAGACAGTATTATATCCCATGACAATAATTCCATATCTTTGAAtcccccccccaatttttttttgttgttttaattCTAAACAGCTGATAATTATTCACTTCTATTTGTCTCACACTTTGCCATTTGCAGTGTCTTGTACAGTGCACGTAGCCTTGCGTGTATACAACGTTTGCTCAAAAAGACTGTCTGACCAATAGTCTGCTTGTCTGAACGAACATGTTGACATCCCATGCACCAAAACAAGAATTACTAACTTATTAGAGCTTCACCTCACCTGGgtggtgttcattaggcacccaATGGAAGAagatggactgaaacagggagggccCTTCTGGATTTGTCCAATCAGAAATGCTCatttttgttttccgttgcaaaaaatgttttttttggtgTCTGCCCTAACAAACAGGTAATCCAATAGTCATAGGCATGGCTATGAATCCAGGAGGCGTTTTATGAGGGTGAatgcaactttgagaaaaacttCACACATATGGTTACAGTGAAGCCTCTCCTTatatcttatatacagtatacaagcATGGCTTTGGTCCTCACTTCATACCTGGCTGTACAAAAACCAAAACAAGCTTTTATTGCAAAGGAGGTAGTATGCAAAGCGTCTAAAGGGAGTCTAATACGCAGAGGTAATCAAGGAggggcaaaacacacacacaagcagcacacacacaagccgcacacacacaccgcagccATCAGAAACAAAACACTGTCTCCAACAATGCTCCCTGAAAGCTCTAGACGCCTGACCTCTCAACCGCTCCCCCCCCAAAAGCTACTGTTGTGAGGACTAGCTTTTAGGAGTATACTCTTACTCAAGTAGAAAAGAGAGTAAGGGCAACTTGAACCAAACAGTCAGACCACTTTATTCCTGCTAAGAGGTTTCAGTAAGTGGGTCTAATTTGAGGTTGGAGgtgtgggtgtgggaggaggACTACGCTCGGATCAGAGGGATCAGAAAAcggcctcttcttctcctcccaaTAATTGAATGACTGTTAAAACCGCACGCTCGTTTATACCCCCCATTAAAAGCACATACTCTTTTTAATGAGCAGCAAAGCAGGCACCTCCTCTCACACTGTCattagccctctctctctcttgttctctctctttaatAACCGACCAAACAGCCTCGGAGTCAGATCGTGTAGTGGTCACTTCACTATAGCCACTCATACTGGACTCATCATAGTGGTGCTCGAgaggaagaacacacacacacacacacacacacacacaccgtcttgAGCTTGTCAAGTTAGCTGCAATCGGAGGGTTAGCTAAGTGAGTTCAGTTCAGTCAGTGTAAACATCACCAACTTGGCTGCTCCATTCTGCCGTGTGTTATTAAGGGATCAGTGTCCTGAGGAATGCACAAAACCATTTAATCACAATCTAAATCAAATAGGGAAAAATAGGAAAATGGAAAGCTATAGGAACGTCACTATGCCACCATGCCATCCTTGCCCATGGGTCCACAGAGGAAACAAAACAGCATTTGGTTGTGTCCGATTTTTCTTCTCTTTCCAAGAaatccttttatttcttatttttaaacACATTTCAAATAGTCCTGGTAATATTTCATCTAAAAGGGCAATAGGTGAGTTCATTCTGTTCATTCACTCTGTCAGGTGGTGTCTCTGACACAGCTCTCAGGTCTCTCTGCTGTCTTTGGGTAGGGGCTGGGAATATGGATAGAGTCTCTATCTCTATCTTAGGCCCTGGGGATGTCACGTTGGTGGGTCTGTtattacctcctcctcctcctgttcgaGGCCCAGTCCCGGTGGTCTGTAATCAGGGTACTGGGCGTTGTCGAAATGCACGTGGTGGACACTCTGGACATGGGTCTTTAGGTTCCCTTTCTGAGAGGCTCGGTACGGGCAGAGGCGGCACCGGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU162640 lncRNA upstream 19688 39976639 ~ 39984542 (+) True G141507
TU162636 lncRNA upstream 35860 39968068 ~ 39968370 (+) True G141503
TU162619 lncRNA upstream 61858 39942149 ~ 39942372 (+) True G141486
TU162561 lncRNA upstream 89178 39833539 ~ 39915052 (+) True G141429
TU162570 lncRNA upstream 154882 39849073 ~ 39849348 (+) True G141438
TU162754 lncRNA downstream 209517 40216794 ~ 40223435 (+) False LOC110489640
TU162744 lncRNA downstream 217796 40225073 ~ 40241388 (+) False LOC110489640
TU162746 lncRNA downstream 217796 40225073 ~ 40248848 (+) False LOC110489640
TU162747 lncRNA downstream 217796 40225073 ~ 40275255 (+) False LOC110489640
TU162748 lncRNA downstream 217796 40225073 ~ 40292372 (+) False LOC110489640
XM_021562345.2 mRNA upstream 141710 39821880 ~ 39862520 (+) True LOC110489609
XM_036948220.1 mRNA upstream 237852 39569485 ~ 39766378 (+) False znf407
XM_036948222.1 mRNA upstream 237852 39569521 ~ 39766378 (+) False znf407
XM_036948223.1 mRNA upstream 237852 39571339 ~ 39766378 (+) False znf407
XM_021562327.2 mRNA upstream 456867 39540706 ~ 39547363 (+) True LOC110489590
XR_005036684.1 mRNA downstream 108681 40115958 ~ 40222642 (+) False LOC110489640
XM_036948247.1 mRNA downstream 108681 40115958 ~ 40225332 (+) False LOC110489640
XM_036948253.1 mRNA downstream 109155 40116432 ~ 40225332 (+) False LOC110489640
XM_036948250.1 mRNA downstream 109488 40116765 ~ 40225332 (+) False LOC110489640
XM_021562443.2 mRNA downstream 301901 40309178 ~ 40319263 (+) True galr1a
TU160072 other upstream 1952486 38051359 ~ 38051744 (+) True G139179
TU159989 other upstream 2060218 37943742 ~ 37944012 (+) True G139101
TU159977 other upstream 2063516 37920391 ~ 37940714 (+) True G139089
TU159972 other upstream 2082160 37920348 ~ 37922070 (+) False G139089
TU164559 other downstream 1532018 41539295 ~ 41541591 (+) True LOC110489834
TU165213 other downstream 1961097 41968374 ~ 41969317 (+) False G143938
TU165214 other downstream 1961097 41968374 ~ 41969222 (+) True G143938
TU166008 other downstream 2503053 42510330 ~ 42566030 (+) True G144661
TU167624 other downstream 3723595 43730872 ~ 43731218 (+) True G146054

Expression Profile