RNA id: TU162960


Basic Information

Item Value
RNA id TU162960
length 501
lncRNA type inter_gene
GC content 0.44
exon number 2
gene id G141799
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 40405494 ~ 40406246 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ccctgtccgggggtgtcctcggatggggtcacagtgtctcctgacccctcctgtctcagcctccagtatttatgctgcagtagtttatgtgtcggggggctagggtcagtttgttatatctggagtacttctcctgtcctattcggtgtcctgtgtgaatctaagtgtgcgttctctaattctctccttctccctttctctctctcggaggacctgagccctaggaccatgccccaggaatacctgacatgatgactccttgctatccccagtccacctgactgtgctgctgctccagtttcaactgctctgccttattattattcgaccatgctggtcatttatgaacatttgaacatcttgaccatgttctgttataatctccacccggcacagccagaagaggactggccaccccacaaagcctggttcctctctaggtttcttcctaggttttggcctttctagggagtttttcctagccaccgtgcttctacacct

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU162760 lncRNA upstream 111378 40236507 ~ 40294116 (+) True G141613
TU162748 lncRNA upstream 113122 40225073 ~ 40292372 (+) False LOC110489640
TU162747 lncRNA upstream 130239 40225073 ~ 40275255 (+) False LOC110489640
TU162746 lncRNA upstream 156646 40225073 ~ 40248848 (+) False LOC110489640
TU162750 lncRNA upstream 158340 40225073 ~ 40247154 (+) False LOC110489640
TU163380 lncRNA downstream 26102 40432348 ~ 40432598 (+) True G142202
TU163382 lncRNA downstream 27283 40433529 ~ 40433864 (+) True G142204
TU163490 lncRNA downstream 99476 40505722 ~ 40505961 (+) True G142312
TU163492 lncRNA downstream 99773 40506019 ~ 40506222 (+) True G142314
TU163552 lncRNA downstream 178429 40584675 ~ 40585526 (+) True G142372
XM_021562443.2 mRNA upstream 86231 40309178 ~ 40319263 (+) True galr1a
XM_036948247.1 mRNA upstream 180162 40115958 ~ 40225332 (+) False LOC110489640
XM_036948253.1 mRNA upstream 180162 40116432 ~ 40225332 (+) False LOC110489640
XM_036948250.1 mRNA upstream 180162 40116765 ~ 40225332 (+) False LOC110489640
XR_005036684.1 mRNA upstream 182852 40115958 ~ 40222642 (+) False LOC110489640
XM_021562456.2 mRNA downstream 229853 40636099 ~ 40653382 (+) True LOC110489685
XM_036948320.1 mRNA downstream 374780 40781026 ~ 40847759 (+) False LOC110489695
XM_036948326.1 mRNA downstream 377115 40783361 ~ 40847759 (+) False LOC110489695
XM_021562694.2 mRNA downstream 474928 40881174 ~ 40885140 (+) True LOC110489783
XM_036948451.1 mRNA downstream 888435 41294681 ~ 41355200 (+) False LOC110489815
TU160072 other upstream 2353750 38051359 ~ 38051744 (+) True G139179
TU159989 other upstream 2461482 37943742 ~ 37944012 (+) True G139101
TU159977 other upstream 2464780 37920391 ~ 37940714 (+) True G139089
TU159972 other upstream 2483424 37920348 ~ 37922070 (+) False G139089
TU164559 other downstream 1133049 41539295 ~ 41541591 (+) True LOC110489834
TU165213 other downstream 1562128 41968374 ~ 41969317 (+) False G143938
TU165214 other downstream 1562128 41968374 ~ 41969222 (+) True G143938
TU166008 other downstream 2104084 42510330 ~ 42566030 (+) True G144661
TU167624 other downstream 3324626 43730872 ~ 43731218 (+) True G146054

Expression Profile