RNA id: TU163380


Basic Information

Item Value
RNA id TU163380
length 251
lncRNA type inter_gene
GC content 0.40
exon number 1
gene id G142202
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 40432348 ~ 40432598 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tcctctgacaccgcctggtgtagaggtcctggatcgcaggaagcttggccatggtgatgtactgggccatacgcactaccctctgtagtgccttgcggtcggaggtcgagcagttgccataccaggcagtgatgcaactcatcaggatgctctcgatggtgcagctgtaaaatattttgaggatctgaggacccattccaaaacttttcagtctcctgaggcagaataggttttgttgtgccctcttcaca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU162960 lncRNA upstream 26102 40405494 ~ 40406246 (+) True G141799
TU162760 lncRNA upstream 138232 40236507 ~ 40294116 (+) True G141613
TU162748 lncRNA upstream 139976 40225073 ~ 40292372 (+) False LOC110489640
TU162747 lncRNA upstream 157093 40225073 ~ 40275255 (+) False LOC110489640
TU163382 lncRNA downstream 931 40433529 ~ 40433864 (+) True G142204
TU163490 lncRNA downstream 73124 40505722 ~ 40505961 (+) True G142312
TU163492 lncRNA downstream 73421 40506019 ~ 40506222 (+) True G142314
TU163552 lncRNA downstream 152077 40584675 ~ 40585526 (+) True G142372
TU163808 lncRNA downstream 320894 40753492 ~ 40753751 (+) True G142612
XM_021562443.2 mRNA upstream 113085 40309178 ~ 40319263 (+) True galr1a
XM_036948247.1 mRNA upstream 207016 40115958 ~ 40225332 (+) False LOC110489640
XM_036948253.1 mRNA upstream 207016 40116432 ~ 40225332 (+) False LOC110489640
XM_036948250.1 mRNA upstream 207016 40116765 ~ 40225332 (+) False LOC110489640
XR_005036684.1 mRNA upstream 209706 40115958 ~ 40222642 (+) False LOC110489640
XM_021562456.2 mRNA downstream 203501 40636099 ~ 40653382 (+) True LOC110489685
XM_036948320.1 mRNA downstream 348428 40781026 ~ 40847759 (+) False LOC110489695
XM_036948326.1 mRNA downstream 350763 40783361 ~ 40847759 (+) False LOC110489695
XM_021562694.2 mRNA downstream 448576 40881174 ~ 40885140 (+) True LOC110489783
XM_036948451.1 mRNA downstream 862083 41294681 ~ 41355200 (+) False LOC110489815
TU160072 other upstream 2380604 38051359 ~ 38051744 (+) True G139179
TU159989 other upstream 2488336 37943742 ~ 37944012 (+) True G139101
TU159977 other upstream 2491634 37920391 ~ 37940714 (+) True G139089
TU159972 other upstream 2510278 37920348 ~ 37922070 (+) False G139089
TU164559 other downstream 1106697 41539295 ~ 41541591 (+) True LOC110489834
TU165213 other downstream 1535776 41968374 ~ 41969317 (+) False G143938
TU165214 other downstream 1535776 41968374 ~ 41969222 (+) True G143938
TU166008 other downstream 2077732 42510330 ~ 42566030 (+) True G144661
TU167624 other downstream 3298274 43730872 ~ 43731218 (+) True G146054

Expression Profile