RNA id: TU163382


Basic Information

Item Value
RNA id TU163382
length 336
lncRNA type inter_gene
GC content 0.33
exon number 1
gene id G142204
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 40433529 ~ 40433864 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GacaacagctagtcttactggggtctgatACGTAATGAAAAATACATCACTAACAAagtactttacaatttacatacactaccgtcaaaagtttggggtcacttagaaatgttcttgttttccatgaaaacatacatgaaagagttgcaaaatgaataggaaatatagtcaagatgttgacaagctcataaataatgatttttaattgaaaaaataattgtgtccttcaaactttgctttcgtcaaataatcctccatttgcagcaaatacagccttgcagacctttggcattatAGTTGTAAATTTGTTGAGATAATCTgactcccacaagttgg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU163380 lncRNA upstream 931 40432348 ~ 40432598 (+) True G142202
TU162960 lncRNA upstream 27283 40405494 ~ 40406246 (+) True G141799
TU162760 lncRNA upstream 139413 40236507 ~ 40294116 (+) True G141613
TU162748 lncRNA upstream 141157 40225073 ~ 40292372 (+) False LOC110489640
TU163490 lncRNA downstream 71858 40505722 ~ 40505961 (+) True G142312
TU163492 lncRNA downstream 72155 40506019 ~ 40506222 (+) True G142314
TU163552 lncRNA downstream 150811 40584675 ~ 40585526 (+) True G142372
TU163808 lncRNA downstream 319628 40753492 ~ 40753751 (+) True G142612
TU163839 lncRNA downstream 343334 40777198 ~ 40777407 (+) True G142643
XM_021562443.2 mRNA upstream 114266 40309178 ~ 40319263 (+) True galr1a
XM_036948247.1 mRNA upstream 208197 40115958 ~ 40225332 (+) False LOC110489640
XM_036948253.1 mRNA upstream 208197 40116432 ~ 40225332 (+) False LOC110489640
XM_036948250.1 mRNA upstream 208197 40116765 ~ 40225332 (+) False LOC110489640
XR_005036684.1 mRNA upstream 210887 40115958 ~ 40222642 (+) False LOC110489640
XM_021562456.2 mRNA downstream 202235 40636099 ~ 40653382 (+) True LOC110489685
XM_036948320.1 mRNA downstream 347162 40781026 ~ 40847759 (+) False LOC110489695
XM_036948326.1 mRNA downstream 349497 40783361 ~ 40847759 (+) False LOC110489695
XM_021562694.2 mRNA downstream 447310 40881174 ~ 40885140 (+) True LOC110489783
XM_036948451.1 mRNA downstream 860817 41294681 ~ 41355200 (+) False LOC110489815
TU160072 other upstream 2381785 38051359 ~ 38051744 (+) True G139179
TU159989 other upstream 2489517 37943742 ~ 37944012 (+) True G139101
TU159977 other upstream 2492815 37920391 ~ 37940714 (+) True G139089
TU159972 other upstream 2511459 37920348 ~ 37922070 (+) False G139089
TU164559 other downstream 1105431 41539295 ~ 41541591 (+) True LOC110489834
TU165213 other downstream 1534510 41968374 ~ 41969317 (+) False G143938
TU165214 other downstream 1534510 41968374 ~ 41969222 (+) True G143938
TU166008 other downstream 2076466 42510330 ~ 42566030 (+) True G144661
TU167624 other downstream 3297008 43730872 ~ 43731218 (+) True G146054

Expression Profile