RNA id: TU163490


Basic Information

Item Value
RNA id TU163490
length 240
lncRNA type inter_gene
GC content 0.47
exon number 1
gene id G142312
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 40505722 ~ 40505961 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gttaagaaaatacctacaaaaaatGAATGTGATAAGAATGACAAATAATAAcagtagtggggctatatacagggggtaccggtacagagtaatatatacatgtaggcagagttattaaagtgcctatgcatagataataacagagagtagcagcagtgttcctggagagcaatgcaaatagtctgggtagccatttgattagctgttcaggagtcttgtgtcttaagctatttaggagcc

Function

GO: NA

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU163382 lncRNA upstream 71858 40433529 ~ 40433864 (+) True G142204
TU163380 lncRNA upstream 73124 40432348 ~ 40432598 (+) True G142202
TU162960 lncRNA upstream 99476 40405494 ~ 40406246 (+) True G141799
TU162760 lncRNA upstream 211606 40236507 ~ 40294116 (+) True G141613
TU162750 lncRNA upstream 258568 40225073 ~ 40247154 (+) False LOC110489640
TU163492 lncRNA downstream 58 40506019 ~ 40506222 (+) True G142314
TU163552 lncRNA downstream 78714 40584675 ~ 40585526 (+) True G142372
TU163808 lncRNA downstream 247531 40753492 ~ 40753751 (+) True G142612
TU163839 lncRNA downstream 271237 40777198 ~ 40777407 (+) True G142643
TU163841 lncRNA downstream 279979 40785940 ~ 40786178 (+) True LOC110489695
XM_021562443.2 mRNA upstream 186459 40309178 ~ 40319263 (+) True galr1a
XM_036948247.1 mRNA upstream 280390 40115958 ~ 40225332 (+) False LOC110489640
XM_036948253.1 mRNA upstream 280390 40116432 ~ 40225332 (+) False LOC110489640
XM_036948250.1 mRNA upstream 280390 40116765 ~ 40225332 (+) False LOC110489640
XR_005036684.1 mRNA upstream 283080 40115958 ~ 40222642 (+) False LOC110489640
XM_021562456.2 mRNA downstream 130138 40636099 ~ 40653382 (+) True LOC110489685
XM_036948320.1 mRNA downstream 275065 40781026 ~ 40847759 (+) False LOC110489695
XM_036948326.1 mRNA downstream 277400 40783361 ~ 40847759 (+) False LOC110489695
XM_021562694.2 mRNA downstream 375213 40881174 ~ 40885140 (+) True LOC110489783
XM_036948451.1 mRNA downstream 788720 41294681 ~ 41355200 (+) False LOC110489815
TU160072 other upstream 2453978 38051359 ~ 38051744 (+) True G139179
TU159989 other upstream 2561710 37943742 ~ 37944012 (+) True G139101
TU159977 other upstream 2565008 37920391 ~ 37940714 (+) True G139089
TU159972 other upstream 2583652 37920348 ~ 37922070 (+) False G139089
TU164559 other downstream 1033334 41539295 ~ 41541591 (+) True LOC110489834
TU165213 other downstream 1462413 41968374 ~ 41969317 (+) False G143938
TU165214 other downstream 1462413 41968374 ~ 41969222 (+) True G143938
TU166008 other downstream 2004369 42510330 ~ 42566030 (+) True G144661
TU167624 other downstream 3224911 43730872 ~ 43731218 (+) True G146054

Expression Profile